RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 EFCAB8A8MWE9 144 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 DDX21Q9NR30 783 aaKnown RBP eCLIP5.67□□□□□ -1.5
PCDH9-201ENST00000377861 ARAP3Q8WWN8 1544 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 DCAF5Q96JK2 942 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 TMEM51Q9NW97 253 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 ATP10BO94823 1461 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 FAM129AQ9BZQ8 928 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 RRP12Q5JTH9 1297 aaKnown RBP5.67□□□□□ -1.5
PCDH9-201ENST00000377861 GLE1Q53GS7 698 aaKnown RBP5.67□□□□□ -1.5
PCDH9-201ENST00000377861 MAPKBP1O60336 1514 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 SKILP12757 684 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 ZNF579Q8NAF0 562 aaKnown RBP5.67□□□□□ -1.5
PCDH9-201ENST00000377861 USP19O94966 1318 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 BRD1O95696 1058 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 C3orf20Q8ND61 904 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 CMA1P23946 247 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 FKBP15Q5T1M5 1219 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 EIF1ADQ8N9N8 165 aaKnown RBP5.67□□□□□ -1.5
PCDH9-201ENST00000377861 MED14O60244 1454 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 SSFA2P28290 1259 aa5.67□□□□□ -1.5
PCDH9-201ENST00000377861 ARHGAP6O43182 974 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 KCND1Q9NSA2 647 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 FSD1Q9BTV5 496 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 UBAC1Q9BSL1 405 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 PRDM15P57071 1507 aaPredicted RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 VAV2P52735 878 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 GSTO1P78417 241 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 TRIM28Q13263 835 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ZNF213O14771 459 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 TATP17735 454 aaPredicted RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 GIMAP6Q6P9H5 292 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ALS2CR12Q96Q35 445 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 RBM28Q9NW13 759 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 SARM1Q6SZW1 724 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 PCDHB15Q9Y5E8 787 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ATP5JP18859 108 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 SLC17A8Q8NDX2 589 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 GSDMAQ96QA5 445 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 TOP1P11387 765 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 NBPF9Q3BBW0 867 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ARXQ96QS3 562 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 GBP7Q8N8V2 638 aaPredicted RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ANKRD13DQ6ZTN6 518 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ZNF518AQ6AHZ1 1483 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 CATIPQ7Z7H3 387 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 APLFQ8IW19 511 aaPredicted RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 RHPN1Q8TCX5 695 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 CAVIN4Q5BKX8 364 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 SPTLC3Q9NUV7 552 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ATP5DP30049 168 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 CASQ1P31415 396 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 PPFIA1Q13136 1202 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 RCOR1Q9UKL0 485 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 RASSF2P50749 326 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 SLU7O95391 586 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 GGNBP2Q9H3C7 697 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 VPS37DQ86XT2 251 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 MAP4K1Q92918 833 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ABCC10Q5T3U5 1492 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 GNA11P29992 359 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 DIS3Q9Y2L1 958 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 CD109Q6YHK3 1445 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 MARCH6O60337 910 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 MAATS1Q7Z4T9 603 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ZSWIM6Q9HCJ5 1215 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 FANCAO15360 1455 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ILF2Q12905 390 aaKnown RBP5.66□□□□□ -1.5
PCDH9-201ENST00000377861 IP6K1Q92551 441 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 C8orf76Q96K31 380 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 ARHGAP25P42331 645 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 IWS1Q96ST2 819 aa5.66□□□□□ -1.5
PCDH9-201ENST00000377861 IGHDP01880 384 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 NCOA7Q8NI08 942 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 hCG_1984214I3L0E3 225 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 PDLIM2Q96JY6 352 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 R3HCC1Q9Y3T6 440 aaKnown RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 EDC4Q6P2E9 1401 aaKnown RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 ADCY5O95622 1261 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 DNAJC21Q5F1R6 531 aaKnown RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 CCDC170Q8IYT3 715 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 CIAO1O76071 339 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 CLIP2Q9UDT6 1046 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 CHMLP26374 656 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 CYLC1P35663 651 aaPredicted RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 EIF2AK4Q9P2K8 1649 aaKnown RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 ETF1P62495 437 aaKnown RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 KIAA1328Q86T90 577 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 BICRAQ9NZM4 1560 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 CTAGE9A4FU28 777 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 H7C1D1 291 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 GOLGA5Q8TBA6 731 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 MORC2Q9Y6X9 1032 aaPredicted RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 RPL13P26373 211 aaKnown RBP5.65□□□□□ -1.5
PCDH9-201ENST00000377861 ARHGAP29Q52LW3 1261 aa5.65□□□□□ -1.5
PCDH9-201ENST00000377861 RIPPLY1Q0D2K3 151 aa5.65□□□□□ -1.51
PCDH9-201ENST00000377861 CPSF1Q10570 1443 aaKnown RBP5.65□□□□□ -1.51
PCDH9-201ENST00000377861 SNX16P57768 344 aa5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms