RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 LRRC24Q50LG9 513 aa12.4□□□□□ -0.42
LIMA1-201ENST00000341247 CWC25Q9NXE8 425 aaPredicted RBP12.4□□□□□ -0.42
LIMA1-201ENST00000341247 WDR33Q9C0J8 1336 aaKnown RBP12.4□□□□□ -0.42
LIMA1-201ENST00000341247 CASP7P55210 303 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 ASAP1Q9ULH1 1129 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 PARP4Q9UKK3 1724 aaKnown RBP12.39□□□□□ -0.43
LIMA1-201ENST00000341247 ABCC6O95255 1503 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 RPAP1Q9BWH6 1393 aaPredicted RBP12.39□□□□□ -0.43
LIMA1-201ENST00000341247 STX6O43752 255 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 FERMT3Q86UX7 667 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 ANP32BQ92688 251 aaKnown RBP12.39□□□□□ -0.43
LIMA1-201ENST00000341247 MAP4K1Q92918 833 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 LRRC2Q9BYS8 371 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 PUS3Q9BZE2 481 aaKnown RBP12.39□□□□□ -0.43
LIMA1-201ENST00000341247 TPCN1Q9ULQ1 816 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 GOLIM4O00461 696 aa12.39□□□□□ -0.43
LIMA1-201ENST00000341247 ERBB4Q15303 1308 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 PPFIA3O75145 1194 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 ZSWIM6Q9HCJ5 1215 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 TMOD3Q9NYL9 352 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 ISY1Q9ULR0 285 aaKnown RBP12.38□□□□□ -0.43
LIMA1-201ENST00000341247 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.38□□□□□ -0.43
LIMA1-201ENST00000341247 FOXO4P98177 505 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 SYNE4Q8N205 404 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 NHSL1Q5SYE7 1610 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 HIP1O00291 1037 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 GPTP24298 496 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 BLOC1S2Q6QNY1 142 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 DNAJC10Q8IXB1 793 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 SNRKQ9NRH2 765 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 PAPPAQ13219 1627 aa12.38□□□□□ -0.43
LIMA1-201ENST00000341247 TJP1Q07157 1748 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 EPB41L2O43491 1005 aaKnown RBP12.37□□□□□ -0.43
LIMA1-201ENST00000341247 ST3GAL1Q11201 340 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 RABL6Q3YEC7 729 aaPredicted RBP12.37□□□□□ -0.43
LIMA1-201ENST00000341247 VPS53Q5VIR6 699 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 FAM173BQ6P4H8 233 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 FAM89AQ96GI7 184 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 BTG4Q9NY30 223 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 LAMB4A4D0S4 1761 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.37□□□□□ -0.43
LIMA1-201ENST00000341247 ZSCAN22P10073 491 aaPredicted RBP12.37□□□□□ -0.43
LIMA1-201ENST00000341247 ZNF445P59923 1031 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 NUP188Q5SRE5 1749 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 ATP5JP18859 108 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 IL17RAQ96F46 866 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 SLC4A9Q96Q91 983 aa12.37□□□□□ -0.43
LIMA1-201ENST00000341247 ERVV-2B6SEH9 535 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 H7C1W4 665 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 TAF5LO75529 589 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 FOSBP53539 338 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 DNM1Q05193 864 aaKnown RBP12.36□□□□□ -0.43
LIMA1-201ENST00000341247 RNF20Q5VTR2 975 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 CARD10Q9BWT7 1032 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 COL15A1P39059 1388 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 ATG9AQ7Z3C6 839 aa12.36□□□□□ -0.43
LIMA1-201ENST00000341247 NAP1L2Q9ULW6 460 aaPredicted RBP12.36□□□□□ -0.43
LIMA1-201ENST00000341247 MBD3O95983 291 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 F13A1P00488 732 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 FGD1P98174 961 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 FKBP4Q02790 459 aaKnown RBP eCLIP12.35□□□□□ -0.43
LIMA1-201ENST00000341247 MPNDQ8N594 471 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 A0A0G2JLW4 131 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 ESPNB1AK53 854 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 HSP90B1P14625 803 aaKnown RBP12.35□□□□□ -0.43
LIMA1-201ENST00000341247 HSP90AB3PQ58FF7 597 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 PIGBQ92521 554 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 PSMA5P28066 241 aa12.35□□□□□ -0.43
LIMA1-201ENST00000341247 NKX1-1Q15270 411 aaPredicted RBP12.35□□□□□ -0.43
LIMA1-201ENST00000341247 TCHHQ07283 1943 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 TAF7LQ5H9L4 462 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 GORABQ5T7V8 394 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 LARP1BQ659C4 914 aaKnown RBP12.34□□□□□ -0.43
LIMA1-201ENST00000341247 LRSAM1Q6UWE0 723 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 A0A1B0GUL7 405 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 FAM177BA6PVY3 158 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 TM6SF1Q9BZW5 370 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 MTMR6Q9Y217 621 aa12.34□□□□□ -0.43
LIMA1-201ENST00000341247 ZNF609O15014 1411 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 TNS2Q63HR2 1409 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 RPS6KB1P23443 525 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 CCDC57Q2TAC2 916 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 DDX11Q96FC9 970 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 HAUS7Q99871 368 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 MED23Q9ULK4 1368 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 COL16A1Q07092 1604 aaPredicted RBP12.33□□□□□ -0.44
LIMA1-201ENST00000341247 IFIT1P09914 478 aaKnown RBP12.33□□□□□ -0.44
LIMA1-201ENST00000341247 ADORA1P30542 326 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 CDC37L1Q7L3B6 337 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 CHST3Q7LGC8 479 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 ZSCAN31Q96LW9 406 aaPredicted RBP12.33□□□□□ -0.44
LIMA1-201ENST00000341247 PAG1Q9NWQ8 432 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 ITGB4P16144 1822 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 EYA2O00167 538 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 CCDC173Q0VFZ6 552 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 TOB2Q14106 344 aaPredicted RBP12.33□□□□□ -0.44
LIMA1-201ENST00000341247 MCMDC2Q4G0Z9 681 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 CCDC191Q8NCU4 936 aa12.33□□□□□ -0.44
LIMA1-201ENST00000341247 SH2B1Q9NRF2 756 aaPredicted RBP12.33□□□□□ -0.44
LIMA1-201ENST00000341247 TAOK2Q9UL54 1235 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms