RNA–Protein interactions for RNA: ENST00000317968.8

PDLIM5-201, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDLIM5, Length 6,083 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-201ENST00000317968 BICC1Q9H694 974 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 STAP2Q9UGK3 403 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 PALLDQ8WX93 1383 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 HMG20BQ9P0W2 317 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 CLEC11AQ9Y240 323 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 R3HCC1Q9Y3T6 440 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 NBPF7P0C2Y1 421 aaPredicted RBP10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 RC3H1Q5TC82 1133 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 ANKRD18AQ8IVF6 992 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 FAM184AQ8NB25 1140 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 ASAP1Q9ULH1 1129 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 AFF2P51816 1311 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 IGSF3O75054 1194 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 RBM6P78332 1123 aaKnown RBP10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 POLA2Q14181 598 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 NUTM1Q86Y26 1132 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 ATP2B3Q16720 1220 aa10.2□□□□□ -0.78
PDLIM5-201ENST00000317968 AHDC1Q5TGY3 1603 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 CDHR2Q9BYE9 1310 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 CPLX1O14810 134 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 HMGB1P09429 215 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 SUCLG2Q96I99 432 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 TBC1D32Q96NH3 1257 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 DNAJC2Q99543 621 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 BEGAINQ9BUH8 593 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 U3KPZ7 1027 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 DDX11L8A8MPP1 907 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 MAP3K12Q12852 859 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 SMARCA5O60264 1052 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 FNBP4Q8N3X1 1017 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 H7C1W4 665 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 PTMAP06454 111 aaKnown RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 PDCP20941 246 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 TMED8Q6PL24 325 aaPredicted RBP10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 TBC1D9Q6ZT07 1266 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 JDP2Q8WYK2 163 aa10.19□□□□□ -0.78
PDLIM5-201ENST00000317968 RGPD8O14715 1765 aaPredicted RBP10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 SLC27A3Q5K4L6 730 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 KRT27Q7Z3Y8 459 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 MROH5Q6ZUA9 1318 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 PHRF1Q9P1Y6 1649 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 SDSP20132 328 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 H3BQV1 296 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 IFFO2Q5TF58 517 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 SPTY2D1Q68D10 685 aaPredicted RBP10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 ZGPATQ8N5A5 531 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 CYP46A1Q9Y6A2 500 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 GNPATO15228 680 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 TPM2P07951 284 aa10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 SKOR2Q2VWA4 1001 aaPredicted RBP10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 COL14A1Q05707 1796 aaKnown RBP10.18□□□□□ -0.78
PDLIM5-201ENST00000317968 CAMTA1Q9Y6Y1 1673 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 SAFBQ15424 915 aaKnown RBP eCLIP10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 TMC4Q7Z404 712 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 SEPT12Q8IYM1 358 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 KDM6AO15550 1401 aaPredicted RBP10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 RPS6KA4O75676 772 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 C8orf34Q49A92 452 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 TPRNQ4KMQ1 711 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 CRKLP46109 303 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 PEAK1Q9H792 1746 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 UTYO14607 1347 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 LDHCP07864 332 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 SF3A1Q15459 793 aaKnown RBP10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 PROSER3Q2NL68 480 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 SYAP1Q96A49 352 aaPredicted RBP10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 ISCA1Q9BUE6 129 aa10.17□□□□□ -0.78
PDLIM5-201ENST00000317968 APBA3O96018 575 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 CYP19A1P11511 503 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 CERS3Q8IU89 383 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 MPHOSPH6Q99547 160 aaKnown RBP10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 CCDC8Q9H0W5 538 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 LMO7Q8WWI1 1683 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 LTN1O94822 1766 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 PNMA6EA0A0J9YXQ4 647 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 EYA3Q99504 573 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 ZBTB1Q9Y2K1 713 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 TTLL7Q6ZT98 887 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 CEP89Q96ST8 783 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 ADCY9O60503 1353 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 PLA2G12BQ9BX93 195 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 K7ELQ4 463 aaPredicted RBP10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 ATP5JP18859 108 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 ESYT1Q9BSJ8 1104 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 BOLA2Q9H3K6 86 aa10.16□□□□□ -0.78
PDLIM5-201ENST00000317968 C6orf229H3BNL8 230 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 TNNI3KQ59H18 835 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 FPGT-TNNI3KV9GXZ4 949 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 COL15A1P39059 1388 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 MPHOSPH10O00566 681 aaKnown RBP10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 NEK4P51957 841 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 SNX21Q969T3 373 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 SH2B1Q9NRF2 756 aaPredicted RBP10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 BLOC1S2Q6QNY1 142 aa10.15□□□□□ -0.78
PDLIM5-201ENST00000317968 CNTNAP4Q9C0A0 1308 aa10.15□□□□□ -0.79
PDLIM5-201ENST00000317968 ALS2Q96Q42 1657 aa10.15□□□□□ -0.79
PDLIM5-201ENST00000317968 CTSWP56202 376 aa10.15□□□□□ -0.79
PDLIM5-201ENST00000317968 FKBP4Q02790 459 aaKnown RBP eCLIP10.15□□□□□ -0.79
PDLIM5-201ENST00000317968 PUM3Q15397 648 aaKnown RBP10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms