RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 SCAND2PQ9GZW5 306 aaPredicted RBP13.41□□□□□ -0.26
SNIP1-201ENST00000296215 ZNF75DP51815 510 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 LONRF2Q1L5Z9 754 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 NAA16Q6N069 864 aaPredicted RBP13.4□□□□□ -0.26
SNIP1-201ENST00000296215 DNAJC25Q9H1X3 360 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 PPP1R7Q15435 360 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 STX1AQ16623 288 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 CAPS2Q9BXY5 557 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 TMEM165Q9HC07 324 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 SLMAPQ14BN4 828 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 CCDC83Q8IWF9 413 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 GPT2Q8TD30 523 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 CNPY2Q9Y2B0 182 aa13.4□□□□□ -0.26
SNIP1-201ENST00000296215 HNRNPCP07910 306 aaKnown RBP eCLIP13.4□□□□□ -0.27
SNIP1-201ENST00000296215 IMMTQ16891 758 aaKnown RBP13.4□□□□□ -0.27
SNIP1-201ENST00000296215 PAX3P23760 479 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 PSMD7P51665 324 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 ZGPATQ8N5A5 531 aaKnown RBP13.39□□□□□ -0.27
SNIP1-201ENST00000296215 LCMT1Q9UIC8 334 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 SAMM50Q9Y512 469 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 ZNF189O75820 626 aaPredicted RBP13.39□□□□□ -0.27
SNIP1-201ENST00000296215 LMOD2Q6P5Q4 547 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 CCDC80Q76M96 950 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 SPDYE1Q8NFV5 336 aaPredicted RBP13.39□□□□□ -0.27
SNIP1-201ENST00000296215 ANKRD36BQ8N2N9 1353 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 SYT1P21579 422 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 SCRN1Q12765 414 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 STIM1Q13586 685 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 PDE1CQ14123 709 aaPredicted RBP13.39□□□□□ -0.27
SNIP1-201ENST00000296215 FERMT3Q86UX7 667 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 OSCARQ8IYS5 282 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 TRIM58Q8NG06 486 aa13.39□□□□□ -0.27
SNIP1-201ENST00000296215 LRPPRCP42704 1394 aaKnown RBP13.38□□□□□ -0.27
SNIP1-201ENST00000296215 PPFIA3O75145 1194 aa13.38□□□□□ -0.27
SNIP1-201ENST00000296215 TBC1D9Q6ZT07 1266 aa13.38□□□□□ -0.27
SNIP1-201ENST00000296215 TRAK1Q9UPV9 953 aa13.38□□□□□ -0.27
SNIP1-201ENST00000296215 ME1P48163 572 aa13.38□□□□□ -0.27
SNIP1-201ENST00000296215 SLFN5Q08AF3 891 aa13.38□□□□□ -0.27
SNIP1-201ENST00000296215 HMGB1P1B2RPK0 211 aaPredicted RBP13.38□□□□□ -0.27
SNIP1-201ENST00000296215 PPFIBP2Q8ND30 876 aa13.38□□□□□ -0.27
SNIP1-201ENST00000296215 CC2D2AQ9P2K1 1620 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 FOSBP53539 338 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 CCDC96Q2M329 555 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 MSL3Q8N5Y2 521 aaKnown RBP13.37□□□□□ -0.27
SNIP1-201ENST00000296215 STAG1Q8WVM7 1258 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 TRIM11Q96F44 468 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 CLTAP09496 248 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 TMED1Q13445 227 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 BMP2KLQ5H9B9 411 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 CCAR1Q8IX12 1150 aaKnown RBP13.37□□□□□ -0.27
SNIP1-201ENST00000296215 SYCP3Q8IZU3 236 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 TCP11Q8WWU5 503 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 GBP1P32455 592 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 TCERG1LQ5VWI1 586 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 MPHOSPH8Q99549 860 aa13.37□□□□□ -0.27
SNIP1-201ENST00000296215 AATFQ9NY61 560 aaKnown RBP eCLIP13.37□□□□□ -0.273e-6■■■□□ 18.2
SNIP1-201ENST00000296215 PPFIA1Q13136 1202 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 CCDC170Q8IYT3 715 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 KLHDC4Q8TBB5 520 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 KLHL33A6NCF5 533 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 GOLGA6BA6NDN3 693 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 NLRP5P59047 1200 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 TMX3Q96JJ7 454 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 KLC4Q9NSK0 619 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 SATB2Q9UPW6 733 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 DHX29Q7Z478 1369 aaKnown RBP13.36□□□□□ -0.27
SNIP1-201ENST00000296215 CTAGE9A4FU28 777 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 STX6O43752 255 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 SKAP2O75563 359 aaPredicted RBP13.36□□□□□ -0.27
SNIP1-201ENST00000296215 TMTC2Q8N394 836 aa13.36□□□□□ -0.27
SNIP1-201ENST00000296215 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.36□□□□□ -0.27
SNIP1-201ENST00000296215 IFT88Q13099 833 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 SYNE3Q6ZMZ3 975 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 IFT74Q96LB3 600 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 ORC3Q9UBD5 711 aaPredicted RBP13.35□□□□□ -0.27
SNIP1-201ENST00000296215 KIF27Q86VH2 1401 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 HIP1RO75146 1068 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 ETF1P62495 437 aaKnown RBP13.35□□□□□ -0.27
SNIP1-201ENST00000296215 C17orf50Q8WW18 174 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 KIF1BPQ96EK5 621 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 TTC14Q96N46 770 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 PSD3Q9NYI0 1048 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 CACNA2D3Q8IZS8 1091 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 RUFY2Q8WXA3 655 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 DNAI2Q9GZS0 605 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 UTP6Q9NYH9 597 aaKnown RBP13.35□□□□□ -0.27
SNIP1-201ENST00000296215 USP16Q9Y5T5 823 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 SLC8A3P57103 927 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 WDR75Q8IWA0 830 aaKnown RBP13.35□□□□□ -0.27
SNIP1-201ENST00000296215 RASEFQ8IZ41 740 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 TRAIPQ9BWF2 469 aa13.35□□□□□ -0.27
SNIP1-201ENST00000296215 SASH1O94885 1247 aa13.34□□□□□ -0.27
SNIP1-201ENST00000296215 DUSP27Q5VZP5 1158 aa13.34□□□□□ -0.27
SNIP1-201ENST00000296215 CC2D2BQ6DHV5 1058 aa13.34□□□□□ -0.27
SNIP1-201ENST00000296215 RABGGTAQ92696 567 aa13.34□□□□□ -0.27
SNIP1-201ENST00000296215 ZNF396Q96N95 335 aaPredicted RBP13.34□□□□□ -0.27
SNIP1-201ENST00000296215 UTP14AQ9BVJ6 771 aaKnown RBP13.34□□□□□ -0.27
SNIP1-201ENST00000296215 CCDC113Q9H0I3 377 aa13.34□□□□□ -0.27
SNIP1-201ENST00000296215 RPGRIP1LQ68CZ1 1315 aa13.34□□□□□ -0.27
SNIP1-201ENST00000296215 RNF40O75150 1001 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 83.7 ms