RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LCN8Q6JVE9 175 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 RANBP3LQ86VV4 465 aaPredicted RBP26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 CARM1Q86X55 608 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 DHFR2Q86XF0 187 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 CADM2Q8N3J6 435 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 POC1BQ8TC44 478 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 MRGPRX4Q96LA9 322 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 TNFRSF10DQ9UBN6 386 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 SLC7A8Q9UHI5 535 aa26.8■■□□□ 1.88
LIMCH1-211ENST00000509638 GTF3C1Q12789 2109 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 TNFSF12-TNFSF13A0A0A6YY99 330 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 A0A1B0GVC2 190 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 ETV2O00321 342 aaPredicted RBP26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 AQP7O14520 342 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 GP1BBP13224 206 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 HTR2AP28223 471 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 OR1E2P47887 323 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 COPZ1P61923 177 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 NPTX1Q15818 432 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 AAGABQ6PD74 315 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 RBM45Q8IUH3 476 aaKnown RBP26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 FAM86B1Q8N7N1 296 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 ACER3Q9NUN7 267 aa26.79■■□□□ 1.88
LIMCH1-211ENST00000509638 NTN1O95631 604 aa26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 SLC25A53Q5H9E4 307 aa26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 ENPP6Q6UWR7 440 aa26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 FGD2Q7Z6J4 655 aa26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 YTHDF3Q7Z739 585 aaKnown RBP26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 CHERPQ8IWX8 916 aaKnown RBP26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 OR52E4Q8NGH9 312 aa26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 PRR14Q9BWN1 585 aa26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 MMADHCQ9H3L0 296 aaPredicted RBP26.78■■□□□ 1.88
LIMCH1-211ENST00000509638 ACOT8O14734 319 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 TPST2O60704 377 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 PSMA4P25789 261 aaKnown RBP26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 MERTKQ12866 999 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 DCST1Q5T197 706 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 WBP2NLQ6ICG8 309 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 FKBP9P1Q75LS8 142 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 ST6GALNAC3Q8NDV1 305 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 GEMIN6Q8WXD5 167 aaKnown RBP26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 MIB2Q96AX9 1013 aa26.77■■□□□ 1.88
LIMCH1-211ENST00000509638 PRKD3O94806 890 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 STAMBPO95630 424 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 BMP7P18075 431 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 CHMP24386 653 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 SLC1A3P43003 542 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 CRYZQ08257 329 aaKnown RBP26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 ZSCAN26Q16670 478 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 IFI44LQ53G44 452 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 MTX3Q5HYI7 312 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 NHSL2Q5HYW2 709 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 POMZP3Q6PJE2 187 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 PLEKHM3Q6ZWE6 761 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 GRINAQ7Z429 371 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 ZNF559Q9BR84 538 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 UGT2B28Q9BY64 529 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 POMPQ9Y244 141 aa26.76■■□□□ 1.87
LIMCH1-211ENST00000509638 H3BML4 177 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 ACTL6AO96019 429 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 ELK4P28324 431 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 ADH6P28332 368 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 DLX5P56178 289 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 TRAP1Q12931 704 aaKnown RBP26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 FLOT2Q14254 428 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 DEF8Q6ZN54 512 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 ABTB1Q969K4 478 aaPredicted RBP26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 ZNF337Q9Y3M9 751 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 RELNP78509 3460 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 NPIPA2E9PIF3 369 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 NPIPA3F8WFD2 350 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 FMO6PO60774 539 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 POU3F2P20265 443 aaPredicted RBP26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 IL11P20809 199 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 C19orf57Q0VDD7 668 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 VASNQ6EMK4 673 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 LSRQ86X29 649 aaPredicted RBP26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 LSMEM1Q8N8F7 131 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 LRGUKQ96M69 825 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 MCHR1Q99705 422 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 TRIM15Q9C019 465 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 TRIM2Q9C040 744 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 TMEM185BQ9H7F4 350 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 CTPS2Q9NRF8 586 aa26.75■■□□□ 1.87
LIMCH1-211ENST00000509638 MPDZO75970 2070 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 OR14I1A6ND48 311 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 PEPDP12955 493 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 TACR3P29371 465 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 PTGS2P35354 604 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 KCNC4Q03721 635 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 SMPDL3BQ92485 455 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 C3orf49Q96BT1 292 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 SARAFQ96BY9 339 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 RPS6KB2Q9UBS0 482 aa26.74■■□□□ 1.87
LIMCH1-211ENST00000509638 A0A1B0GWA3 101 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 CPSF4LA6NMK7 179 aaKnown RBP26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 LINC01387J3KSC0 135 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 IFNW1P05000 195 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 ABOP16442 354 aa26.73■■□□□ 1.87
LIMCH1-211ENST00000509638 HTR3AP46098 478 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms