RNA–Protein interactions for RNA: YMR173W

DDR48, Transcript of DNA damage-responsive protein, yeast

Gene DDR48, Length 1,293 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DDR48	YMR173W	RAI1	P53063	387 aa	Known RBP	4.11	□□□□□ -1.75
DDR48	YMR173W	PPH3	P32345	308 aa		4.1	□□□□□ -1.75
DDR48	YMR173W	AFR1	P33304	620 aa		4.1	□□□□□ -1.75
DDR48	YMR173W	BUL2	Q03758	920 aa	Known RBP	4.1	□□□□□ -1.75
DDR48	YMR173W	HBT1	Q07653	1046 aa	Known RBP	4.1	□□□□□ -1.75
DDR48	YMR173W	MRH1	Q12117	320 aa	Predicted RBP	4.1	□□□□□ -1.75
DDR48	YMR173W	SUT2	Q12286	268 aa		4.1	□□□□□ -1.75
DDR48	YMR173W	CDC48	P25694	835 aa	Known RBP	4.09	□□□□□ -1.75
DDR48	YMR173W	PPS1	P38148	807 aa		4.09	□□□□□ -1.75
DDR48	YMR173W	TPO2	P53283	614 aa		4.09	□□□□□ -1.75
DDR48	YMR173W	ALD6	P54115	500 aa	Known RBP	4.09	□□□□□ -1.75
DDR48	YMR173W	YDR306C	Q06640	478 aa		4.09	□□□□□ -1.75
DDR48	YMR173W	FRE5	Q08908	694 aa		4.09	□□□□□ -1.75
DDR48	YMR173W	FBP1	P09201	348 aa		4.08	□□□□□ -1.76
DDR48	YMR173W	PRP9	P19736	530 aa	Known RBP	4.08	□□□□□ -1.76
DDR48	YMR173W	PRI2	P20457	528 aa		4.08	□□□□□ -1.76
DDR48	YMR173W	NPP1	P25353	742 aa		4.08	□□□□□ -1.76
DDR48	YMR173W	SEC21	P32074	935 aa	Known RBP	4.08	□□□□□ -1.76
DDR48	YMR173W	STE5	P32917	917 aa		4.08	□□□□□ -1.76
DDR48	YMR173W	VAC8	P39968	578 aa		4.08	□□□□□ -1.76
DDR48	YMR173W	PEX19	Q07418	342 aa		4.08	□□□□□ -1.76
DDR48	YMR173W	BNR1	P40450	1375 aa		4.07	□□□□□ -1.76
DDR48	YMR173W	ADE8	P04161	214 aa		4.07	□□□□□ -1.76
DDR48	YMR173W	AAR2	P32357	355 aa	Predicted RBP	4.07	□□□□□ -1.76
DDR48	YMR173W	HBS1	P32769	611 aa	Known RBP	4.07	□□□□□ -1.76
DDR48	YMR173W	YHL017W	P38745	532 aa		4.07	□□□□□ -1.76
DDR48	YMR173W	PFD1	P46988	109 aa		4.07	□□□□□ -1.76
DDR48	YMR173W	TDA5	Q06417	326 aa	Known RBP	4.07	□□□□□ -1.76
DDR48	YMR173W	NOT3	P06102	836 aa	Known RBP	4.06	□□□□□ -1.76
DDR48	YMR173W	CTF13	P35203	478 aa		4.06	□□□□□ -1.76
DDR48	YMR173W	CCM1	P48237	864 aa	Predicted RBP	4.06	□□□□□ -1.76
DDR48	YMR173W	UTP8	P53276	713 aa	Known RBP	4.06	□□□□□ -1.76
DDR48	YMR173W	VPS30	Q02948	557 aa		4.06	□□□□□ -1.76
DDR48	YMR173W	SSL1	Q04673	461 aa	Predicted RBP	4.06	□□□□□ -1.76
DDR48	YMR173W	FMP25	Q08023	583 aa		4.06	□□□□□ -1.76
DDR48	YMR173W	SSF2	Q12153	453 aa	Predicted RBP	4.06	□□□□□ -1.76
DDR48	YMR173W	MDM10	P18409	493 aa		4.05	□□□□□ -1.76
DDR48	YMR173W	STE13	P33894	931 aa		4.05	□□□□□ -1.76
DDR48	YMR173W	DAS1	P47005	663 aa		4.05	□□□□□ -1.76
DDR48	YMR173W	LCD1	Q04377	747 aa		4.05	□□□□□ -1.76
DDR48	YMR173W	MET3	P08536	511 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	PPZ2	P33329	710 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	YRO2	P38079	344 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	YBR184W	P38299	523 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	TDP1	P38319	544 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	ELO3	P40319	345 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	DLT1	Q04216	342 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	ADY4	Q05955	493 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	AFT2	Q08957	416 aa		4.04	□□□□□ -1.76
DDR48	YMR173W	TUB3	P09734	445 aa	Known RBP	4.03	□□□□□ -1.76
DDR48	YMR173W	CTF8	P38877	133 aa		4.03	□□□□□ -1.76
DDR48	YMR173W	TOK1	P40310	691 aa		4.03	□□□□□ -1.76
DDR48	YMR173W	SDP1	P40479	209 aa		4.03	□□□□□ -1.76
DDR48	YMR173W	IMO32	P53219	342 aa		4.03	□□□□□ -1.76
DDR48	YMR173W	NAN1	Q02931	896 aa	Known RBP	4.03	□□□□□ -1.76
DDR48	YMR173W	COQ11	Q05892	277 aa		4.03	□□□□□ -1.76
DDR48	YMR173W	TRM11	Q12463	433 aa		4.03	□□□□□ -1.76
DDR48	YMR173W	GFA1	P14742	717 aa	Known RBP	4.02	□□□□□ -1.77
DDR48	YMR173W	RFA1	P22336	621 aa	Known RBP	4.02	□□□□□ -1.77
DDR48	YMR173W	CDC11	P32458	415 aa		4.02	□□□□□ -1.77
DDR48	YMR173W	RIX1	P38883	763 aa	Predicted RBP	4.02	□□□□□ -1.77
DDR48	YMR173W	TAH11	P47112	604 aa		4.02	□□□□□ -1.77
DDR48	YMR173W	HOF1	Q05080	669 aa		4.02	□□□□□ -1.77
DDR48	YMR173W	TUB1	P09733	447 aa	Known RBP	4.01	□□□□□ -1.77
DDR48	YMR173W	GRX1	P25373	110 aa	Known RBP	4.01	□□□□□ -1.77
DDR48	YMR173W	RPL8B	P29453	256 aa	Known RBP	4.01	□□□□□ -1.77
DDR48	YMR173W	REC104	P33323	182 aa		4.01	□□□□□ -1.77
DDR48	YMR173W	FLO10	P36170	1169 aa		4.01	□□□□□ -1.77
DDR48	YMR173W	YJL049W	P47048	450 aa		4.01	□□□□□ -1.77
DDR48	YMR173W	ERP6	P53198	216 aa		4.01	□□□□□ -1.77
DDR48	YMR173W	SPO75	Q07798	868 aa		4.01	□□□□□ -1.77
DDR48	YMR173W	WRS1	Q12109	432 aa	Known RBP	4.01	□□□□□ -1.77
DDR48	YMR173W	CAF20	P12962	161 aa	Known RBP	4	□□□□□ -1.77
DDR48	YMR173W	RPD3	P32561	433 aa		4	□□□□□ -1.77
DDR48	YMR173W	PET10	P36139	283 aa		4	□□□□□ -1.77
DDR48	YMR173W	YIL108W	P40483	696 aa	Known RBP	4	□□□□□ -1.77
DDR48	YMR173W	VPS73	P53142	486 aa	Known RBP	4	□□□□□ -1.77
DDR48	YMR173W	HDA1	P53973	706 aa		4	□□□□□ -1.77
DDR48	YMR173W	YKR011C	Q02209	353 aa		4	□□□□□ -1.77
DDR48	YMR173W	SWM1	Q12379	170 aa		4	□□□□□ -1.77
DDR48	YMR173W	ICT1	Q12385	394 aa		4	□□□□□ -1.77
DDR48	YMR173W	YNL162W-A	Q3E7A8	72 aa		4	□□□□□ -1.77
DDR48	YMR173W	TYE7	P33122	291 aa	Predicted RBP	3.99	□□□□□ -1.77
DDR48	YMR173W	ERT1	P38140	529 aa		3.99	□□□□□ -1.77
DDR48	YMR173W	FKH2	P41813	862 aa		3.99	□□□□□ -1.77
DDR48	YMR173W	ALR2	P43553	858 aa		3.99	□□□□□ -1.77
DDR48	YMR173W	YAP7	Q08182	245 aa		3.99	□□□□□ -1.77
DDR48	YMR173W	HBN1	Q96VH4	193 aa		3.99	□□□□□ -1.77
DDR48	YMR173W	MPH2	P0CD99	609 aa		3.98	□□□□□ -1.77
DDR48	YMR173W	URA1	P28272	314 aa	Predicted RBP	3.98	□□□□□ -1.77
DDR48	YMR173W	CEP3	P40969	608 aa		3.98	□□□□□ -1.77
DDR48	YMR173W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	3.98	□□□□□ -1.77	not detected
DDR48	YMR173W	MUP1	P50276	574 aa		3.98	□□□□□ -1.77
DDR48	YMR173W	MRPS35	P53292	345 aa		3.98	□□□□□ -1.77
DDR48	YMR173W	ENV7	Q12003	364 aa		3.98	□□□□□ -1.77
DDR48	YMR173W	RPS9A	O13516	197 aa	Known RBP	3.97	□□□□□ -1.77
DDR48	YMR173W	MSD1	P15179	658 aa	Known RBP	3.97	□□□□□ -1.77
DDR48	YMR173W	HCA4	P20448	770 aa	Known RBP	3.97	□□□□□ -1.77
DDR48	YMR173W	ILV6	P25605	309 aa	Known RBP	3.97	□□□□□ -1.77
DDR48	YMR173W	EAF1	Q06337	982 aa		3.97	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 34.5 ms