RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	TFG2	P41896	400 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC42	YLR229C	IOC3	P43596	787 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	ENT3	P47160	408 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	SPO20	Q04359	397 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	MAG2	Q06436	670 aa	Known RBP	4.91	□□□□□ -1.62
CDC42	YLR229C	SPN1	Q06505	410 aa	Predicted RBP	4.91	□□□□□ -1.62
CDC42	YLR229C	FAL1	Q12099	399 aa	Known RBP	4.91	□□□□□ -1.62
CDC42	YLR229C	GIN4	Q12263	1142 aa		4.91	□□□□□ -1.62
CDC42	YLR229C	TY4B-P	A0A0B7P3V8	1104 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	SES1	P07284	462 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-DR6	P0CX70	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-ER1	P0CX71	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-LR2	P0CX72	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-PL	P0CX73	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-JR1	P0CX74	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-LR3	P0CX75	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-ML2	P0CX76	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	KRE2	P27809	442 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	MFT1	P33441	392 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	RER2	P35196	286 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	DID4	P36108	232 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	PFF1	P38244	976 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	SPL2	P38839	148 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	RRP8	P38961	392 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	RPT4	P53549	437 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	YNR063W	P53749	607 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	SIW14	P53965	281 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TIM50	Q02776	476 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	EST2	Q06163	884 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	HDA2	Q06629	674 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	PPM2	Q08282	695 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	THI72	Q08579	599 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	YOR223W	Q12015	292 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-GR1	Q12085	440 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	TY4A-H	Q6Q5P6	413 aa		4.9	□□□□□ -1.63
CDC42	YLR229C	TY1A-OL	Q92392	440 aa	Known RBP	4.9	□□□□□ -1.63
CDC42	YLR229C	CAF20	P12962	161 aa	Known RBP	4.89	□□□□□ -1.63
CDC42	YLR229C	COQ1	P18900	473 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	MBR1	P23493	339 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	LCB1	P25045	558 aa	Known RBP	4.89	□□□□□ -1.63
CDC42	YLR229C	RDS1	P25611	832 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	UGA2	P38067	497 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	MAL33	P38157	468 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	RFC5	P38251	354 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	NPR3	P38742	1146 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	DSN1	P40568	576 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	BUD6	P41697	788 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	RPS0B	P46654	252 aa	Known RBP	4.89	□□□□□ -1.63
CDC42	YLR229C	YJL049W	P47048	450 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	NSG2	P53898	299 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	MRS2	Q01926	470 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	IRC4	Q03036	179 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	UBX2	Q04228	584 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	YLR407W	Q06070	228 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	PSF3	Q12146	194 aa		4.89	□□□□□ -1.63
CDC42	YLR229C	FRS2	P15625	503 aa	Known RBP	4.88	□□□□□ -1.63
CDC42	YLR229C	PTK1	P36002	662 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC42	YLR229C	YAR028W	P39548	234 aa		4.88	□□□□□ -1.63
CDC42	YLR229C	EPL1	P43572	832 aa		4.88	□□□□□ -1.63
CDC42	YLR229C	YFH7	P43591	353 aa		4.88	□□□□□ -1.63
CDC42	YLR229C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
CDC42	YLR229C	FAA4	P47912	694 aa	Known RBP	4.88	□□□□□ -1.63
CDC42	YLR229C	RPS15	Q01855	142 aa	Known RBP	4.88	□□□□□ -1.63
CDC42	YLR229C	YPL062W	Q02781	134 aa		4.88	□□□□□ -1.63
CDC42	YLR229C	ERO1	Q03103	563 aa		4.88	□□□□□ -1.63
CDC42	YLR229C	RKM2	Q03942	479 aa		4.88	□□□□□ -1.63
CDC42	YLR229C	UTP5	Q04177	643 aa	Known RBP	4.88	□□□□□ -1.63
CDC42	YLR229C	PGI1	P12709	554 aa	Known RBP	4.87	□□□□□ -1.63
CDC42	YLR229C	PFK2	P16862	959 aa	Known RBP RIP-Chip data	4.87	□□□□□ -1.63	not detected
CDC42	YLR229C	ERS1	P17261	260 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	RSC6	P25632	483 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	RPT3	P33298	428 aa	Known RBP	4.87	□□□□□ -1.63
CDC42	YLR229C	MDL2	P33311	773 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	NEM1	P38757	446 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	SLS1	P42900	643 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	TYW3	P53177	273 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	SGD1	Q06132	899 aa		4.87	□□□□□ -1.63
CDC42	YLR229C	ALG6	Q12001	544 aa	Known RBP	4.87	□□□□□ -1.63
CDC42	YLR229C	DDP1	Q99321	188 aa	Known RBP	4.87	□□□□□ -1.63
CDC42	YLR229C	HSP82	P02829	709 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	CHO2	P05374	869 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	PET123	P17558	318 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	HCA4	P20448	770 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	PRI2	P20457	528 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	CBP3	P21560	335 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	BAS1	P22035	811 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	SYP1	P25623	870 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	SMY1	P32364	656 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	ANP1	P32629	500 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	BMH2	P34730	273 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	RRP1	P35178	278 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	RTT107	P38850	1070 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	RTS1	P38903	757 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	AKR1	P39010	764 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	SBE2	P42223	864 aa	Known RBP	4.86	□□□□□ -1.63
CDC42	YLR229C	SPO74	P45819	413 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	VPS53	P47061	822 aa		4.86	□□□□□ -1.63
CDC42	YLR229C	PIP2	P52960	996 aa		4.86	□□□□□ -1.63

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