RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	NCB2	Q92317	146 aa		4.63	□□□□□ -1.67
SSL1	YLR005W	MET4	P32389	672 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	YKR018C	P36114	725 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	POL12	P38121	705 aa	Predicted RBP	4.62	□□□□□ -1.67
SSL1	YLR005W	NEM1	P38757	446 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	NMD3	P38861	518 aa	Known RBP	4.62	□□□□□ -1.67
SSL1	YLR005W	GPB2	P39717	880 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	OYE3	P41816	400 aa	Predicted RBP	4.62	□□□□□ -1.67
SSL1	YLR005W	ALT1	P52893	592 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	YNL193W	P53870	558 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	DAL4	Q04895	635 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	CDC45	Q08032	650 aa		4.62	□□□□□ -1.67
SSL1	YLR005W	KEL3	Q08979	651 aa	Predicted RBP	4.62	□□□□□ -1.67
SSL1	YLR005W	TUS1	Q06412	1307 aa		4.61	□□□□□ -1.67
SSL1	YLR005W	VMA2	P16140	517 aa	Known RBP	4.61	□□□□□ -1.67
SSL1	YLR005W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
SSL1	YLR005W	GCD7	P32502	381 aa	Predicted RBP	4.61	□□□□□ -1.67
SSL1	YLR005W	RGT1	P32862	1170 aa		4.61	□□□□□ -1.67
SSL1	YLR005W	TIF4631	P39935	952 aa	Known RBP	4.61	□□□□□ -1.67
SSL1	YLR005W	DAK2	P43550	591 aa		4.61	□□□□□ -1.67
SSL1	YLR005W	YOR059C	Q08448	450 aa	Known RBP	4.61	□□□□□ -1.67
SSL1	YLR005W	MSC6	Q08818	692 aa	Known RBP	4.61	□□□□□ -1.67
SSL1	YLR005W	MDM20	Q12387	796 aa	Known RBP	4.61	□□□□□ -1.67
SSL1	YLR005W	WHI5	Q12416	295 aa		4.61	□□□□□ -1.67
SSL1	YLR005W	MSH3	P25336	1018 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	RNQ1	P25367	405 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	SEG2	P34250	1132 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	UIP5	P36137	443 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	SHU2	P38957	223 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	STM1	P39015	273 aa	Known RBP	4.6	□□□□□ -1.67
SSL1	YLR005W	YJR107W	P47145	328 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	ENP2	P48234	707 aa	Known RBP	4.6	□□□□□ -1.67
SSL1	YLR005W	YNR063W	P53749	607 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	NOG1	Q02892	647 aa	Known RBP	4.6	□□□□□ -1.67
SSL1	YLR005W	RPN7	Q06103	429 aa	Known RBP	4.6	□□□□□ -1.67
SSL1	YLR005W	UBX5	Q06682	500 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	YPL260W	Q08977	551 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	SUT2	Q12286	268 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	YVC1	Q12324	675 aa		4.6	□□□□□ -1.67
SSL1	YLR005W	SRM1	P21827	482 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	PRE8	P23639	250 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	SMY2	P32909	740 aa	Known RBP	4.59	□□□□□ -1.67
SSL1	YLR005W	VPS35	P34110	944 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	ARL1	P38116	183 aa	Known RBP	4.59	□□□□□ -1.67
SSL1	YLR005W	YNG2	P38806	282 aa	Known RBP	4.59	□□□□□ -1.67
SSL1	YLR005W	PES4	P39684	611 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	IOC3	P43596	787 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	RSM26	P47141	266 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	YML037C	Q03703	340 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	SSY1	Q03770	852 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	LAP2	Q10740	671 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	DFG16	Q99234	619 aa		4.59	□□□□□ -1.67
SSL1	YLR005W	GCD6	P32501	712 aa	Known RBP	4.58	□□□□□ -1.68
SSL1	YLR005W	HSP78	P33416	811 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	NNK1	P36003	928 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	GRX7	P38068	203 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	KSP1	P38691	1029 aa	Known RBP	4.58	□□□□□ -1.68
SSL1	YLR005W	TOM71	P38825	639 aa	Known RBP	4.58	□□□□□ -1.68
SSL1	YLR005W	YAR028W	P39548	234 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	YGR125W	P53273	1036 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	SPO1	P53541	631 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SSL1	YLR005W	UTP5	Q04177	643 aa	Known RBP	4.58	□□□□□ -1.68
SSL1	YLR005W	TRE1	Q08919	783 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	AHC1	Q12433	566 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	UBR2	Q07963	1872 aa		4.58	□□□□□ -1.68
SSL1	YLR005W	YMR084W	A2P2R3	262 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	PRO1	P32264	428 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	TIM23	P32897	222 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	SQT1	P35184	431 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	PPX1	P38698	397 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	PEX7	P39108	375 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	YIL092W	P40497	633 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	IRC8	P47046	822 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	MLC1	P53141	149 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	SOL4	P53315	255 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	BRE5	P53741	515 aa	Known RBP	4.57	□□□□□ -1.68
SSL1	YLR005W	TPP1	Q03796	238 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	LAM4	P38800	1345 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	MOT1	P32333	1867 aa		4.57	□□□□□ -1.68
SSL1	YLR005W	HEM1	P09950	548 aa	Predicted RBP	4.56	□□□□□ -1.68
SSL1	YLR005W	OSH3	P38713	996 aa	Known RBP	4.56	□□□□□ -1.68
SSL1	YLR005W	PEX28	P38848	579 aa		4.56	□□□□□ -1.68
SSL1	YLR005W	AFG3	P39925	761 aa		4.56	□□□□□ -1.68
SSL1	YLR005W	VPS53	P47061	822 aa		4.56	□□□□□ -1.68
SSL1	YLR005W	YGL242C	P53066	181 aa		4.56	□□□□□ -1.68
SSL1	YLR005W	ALD6	P54115	500 aa	Known RBP	4.56	□□□□□ -1.68
SSL1	YLR005W	SKG3	Q06315	1026 aa		4.56	□□□□□ -1.68
SSL1	YLR005W	PUS7	Q08647	676 aa	Known RBP	4.56	□□□□□ -1.68
SSL1	YLR005W	OXR1	Q08952	273 aa		4.56	□□□□□ -1.68
SSL1	YLR005W	RAD2	P07276	1031 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	ELM1	P32801	640 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	RPT1	P33299	467 aa	Known RBP	4.55	□□□□□ -1.68
SSL1	YLR005W	PTC7	P38797	343 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	RTS1	P38903	757 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	FPR3	P38911	411 aa	Known RBP	4.55	□□□□□ -1.68
SSL1	YLR005W	FAA3	P39002	694 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	GTS1	P40956	396 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	DUS4	Q06063	367 aa		4.55	□□□□□ -1.68
SSL1	YLR005W	YLR257W	Q06146	321 aa	Known RBP	4.55	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 61.6 ms