RNA–Protein interactions for RNA: YKR043C

SHB17, Transcript of Sedoheptulose bisphosphatase involved in riboneogenesis, yeast

Gene SHB17, Length 816 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHB17	YKR043C	ESL1	P40456	1118 aa		11.18	□□□□□ -0.62
SHB17	YKR043C	TOS3	P43637	560 aa		11.18	□□□□□ -0.62
SHB17	YKR043C	ASN1	P49089	572 aa	Known RBP	11.18	□□□□□ -0.62
SHB17	YKR043C	ALT2	P52892	507 aa		11.18	□□□□□ -0.62
SHB17	YKR043C	YLR455W	Q06188	304 aa		11.18	□□□□□ -0.62
SHB17	YKR043C	MED1	Q12321	566 aa		11.18	□□□□□ -0.62
SHB17	YKR043C	MMS4	P38257	691 aa		11.17	□□□□□ -0.62
SHB17	YKR043C	NPR3	P38742	1146 aa		11.17	□□□□□ -0.62
SHB17	YKR043C	KRE33	P53914	1056 aa	Known RBP	11.17	□□□□□ -0.62
SHB17	YKR043C	SPP382	Q06411	708 aa	Predicted RBP	11.17	□□□□□ -0.62
SHB17	YKR043C	AFT2	Q08957	416 aa		11.17	□□□□□ -0.62
SHB17	YKR043C	YOR022C	Q12204	715 aa		11.17	□□□□□ -0.62
SHB17	YKR043C	CSE2	P33308	149 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	BCD1	P38772	366 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	LCB2	P40970	561 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	SCD6	P45978	349 aa	Known RBP RIP-Chip data	11.16	□□□□□ -0.62	RIP-Chip
SHB17	YKR043C	ISM1	P48526	1002 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	YGR237C	P50089	785 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	SHS1	Q07657	551 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	YOL075C	Q08234	1294 aa		11.16	□□□□□ -0.62
SHB17	YKR043C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	11.15	□□□□□ -0.62	not detected
SHB17	YKR043C	RPL4A	P10664	362 aa	Known RBP	11.15	□□□□□ -0.62
SHB17	YKR043C	OM45	P16547	393 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	PSO2	P30620	661 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	MUD1	P32605	298 aa	Known RBP	11.15	□□□□□ -0.62
SHB17	YKR043C	UBP5	P39944	805 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	BUD16	P39988	312 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	NPP2	P39997	493 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	YER186C	P40101	306 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	RPL4B	P49626	362 aa	Known RBP	11.15	□□□□□ -0.62
SHB17	YKR043C	MET13	P53128	600 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	UTP14	Q04500	899 aa	Known RBP	11.15	□□□□□ -0.62
SHB17	YKR043C	YDR034W-B	Q6Q5X2	51 aa		11.15	□□□□□ -0.62
SHB17	YKR043C	MAK16	P10962	306 aa	Predicted RBP	11.14	□□□□□ -0.63
SHB17	YKR043C	VMA1	P17255	1071 aa	Known RBP	11.14	□□□□□ -0.63
SHB17	YKR043C	GSY2	P27472	705 aa		11.14	□□□□□ -0.63
SHB17	YKR043C	RPN12	P32496	274 aa		11.14	□□□□□ -0.63
SHB17	YKR043C	APN2	P38207	520 aa		11.14	□□□□□ -0.63
SHB17	YKR043C	FMP10	P40098	244 aa		11.14	□□□□□ -0.63
SHB17	YKR043C	PNG1	Q02890	363 aa		11.14	□□□□□ -0.63
SHB17	YKR043C	DON1	Q05610	365 aa		11.14	□□□□□ -0.63
SHB17	YKR043C	SPT2	P06843	333 aa	Predicted RBP	11.13	□□□□□ -0.63
SHB17	YKR043C	RSA4	P25382	515 aa	Known RBP	11.13	□□□□□ -0.63
SHB17	YKR043C	ADK2	P26364	225 aa		11.13	□□□□□ -0.63
SHB17	YKR043C	MRPL7	P36519	292 aa		11.13	□□□□□ -0.63
SHB17	YKR043C	RRM3	P38766	723 aa		11.13	□□□□□ -0.63
SHB17	YKR043C	AIP1	P46680	615 aa	Known RBP	11.13	□□□□□ -0.63
SHB17	YKR043C	HSH155	P49955	971 aa	Known RBP	11.13	□□□□□ -0.63
SHB17	YKR043C	ALG11	P53954	548 aa	Known RBP	11.13	□□□□□ -0.63
SHB17	YKR043C	TIM8	P57744	87 aa		11.13	□□□□□ -0.63
SHB17	YKR043C	OSH2	Q12451	1283 aa		11.13	□□□□□ -0.63
SHB17	YKR043C	TAF13	P11747	167 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	PRR1	P28708	518 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	BIO2	P32451	375 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	TRM2	P33753	639 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	ULI1	P43604	169 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	HEH2	Q03281	663 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	RLP24	Q07915	199 aa	Known RBP	11.12	□□□□□ -0.63
SHB17	YKR043C	MLH2	Q07980	695 aa		11.12	□□□□□ -0.63
SHB17	YKR043C	PRC1	P00729	532 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	CHS2	P14180	963 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	IDI1	P15496	288 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	HEL1	P36113	551 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	YHR202W	P38887	602 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	INP52	P50942	1183 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	YGR130C	P53278	816 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	SPP1	Q03012	353 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	CWC21	Q03375	135 aa	Known RBP	11.11	□□□□□ -0.63
SHB17	YKR043C	DNL4	Q08387	944 aa	Predicted RBP	11.11	□□□□□ -0.63
SHB17	YKR043C	PUS1	Q12211	544 aa	Known RBP	11.11	□□□□□ -0.63
SHB17	YKR043C	TFC8	Q12308	588 aa		11.11	□□□□□ -0.63
SHB17	YKR043C	URK1	P27515	501 aa		11.1	□□□□□ -0.63
SHB17	YKR043C	PIN4	P34217	668 aa	Known RBP RIP-Chip data	11.1	□□□□□ -0.63	not detected
SHB17	YKR043C	ADE17	P38009	592 aa	Known RBP	11.1	□□□□□ -0.63
SHB17	YKR043C	RFS1	P38234	210 aa	Known RBP	11.1	□□□□□ -0.63
SHB17	YKR043C	YFL052W	P43551	465 aa		11.1	□□□□□ -0.63
SHB17	YKR043C	GFD1	Q04839	188 aa	Known RBP	11.1	□□□□□ -0.63
SHB17	YKR043C	YAP7	Q08182	245 aa		11.1	□□□□□ -0.63
SHB17	YKR043C	ASP3-2	P0CX77	362 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	ASP3-3	P0CX78	362 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	ASP3-4	P0CX79	362 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	ASP3-1	P0CZ17	362 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	POL3	P15436	1097 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	XDJ1	P39102	459 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	EEB1	Q02891	456 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	EBS1	Q03466	884 aa	Known RBP	11.09	□□□□□ -0.63
SHB17	YKR043C	COG4	Q06096	861 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	FAL1	Q12099	399 aa	Known RBP	11.09	□□□□□ -0.63
SHB17	YKR043C	PKH2	Q12236	1081 aa	Known RBP	11.09	□□□□□ -0.63
SHB17	YKR043C	YPR117W	Q06116	2489 aa		11.09	□□□□□ -0.63
SHB17	YKR043C	SSB1	P11484	613 aa	Known RBP	11.08	□□□□□ -0.64
SHB17	YKR043C	MRC1	P25588	1096 aa		11.08	□□□□□ -0.64
SHB17	YKR043C	CYS3	P31373	394 aa	Known RBP	11.08	□□□□□ -0.64
SHB17	YKR043C	CCL1	P37366	393 aa		11.08	□□□□□ -0.64
SHB17	YKR043C	STB5	P38699	743 aa		11.08	□□□□□ -0.64
SHB17	YKR043C	SSB2	P40150	613 aa	Known RBP	11.08	□□□□□ -0.64
SHB17	YKR043C	FAF1	P40546	346 aa	Predicted RBP	11.08	□□□□□ -0.64
SHB17	YKR043C	YNL034W	P53963	612 aa		11.08	□□□□□ -0.64
SHB17	YKR043C	YNL018C	P53976	612 aa		11.08	□□□□□ -0.64
SHB17	YKR043C	SNU56	Q03782	492 aa	Known RBP	11.08	□□□□□ -0.64

Retrieved 100 of 5,963 RNA–protein pairs in 54.9 ms