RNA–Protein interactions for RNA: YGR135W

PRE9, Transcript of Alpha 3 subunit of the 20S proteasome, yeast

Gene PRE9, Length 777 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE9	YGR135W	MET5	P47169	1442 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	YRF1-4	O13559	1382 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	TRP3	P00937	484 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	GSY1	P23337	708 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	SYP1	P25623	870 aa	Known RBP	4.97	□□□□□ -1.61
PRE9	YGR135W	CDC11	P32458	415 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	YBR284W	P38150	797 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	TOS1	P38288	455 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	MAL11	P53048	616 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	NKP1	Q12493	238 aa		4.97	□□□□□ -1.61
PRE9	YGR135W	BCK1	Q01389	1478 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	ERS1	P17261	260 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	MEF1	P25039	761 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	PRD1	P25375	712 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	VBA3	P25594	458 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	NAM7	P30771	971 aa	Known RBP	4.96	□□□□□ -1.62
PRE9	YGR135W	MKK2	P32491	506 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	ATG14	P38270	344 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	SPO74	P45819	413 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	PEX14	P53112	341 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	YGR130C	P53278	816 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	YRF1-1	P0CX20	1796 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	YRF1-5	P0CX21	1796 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	YRF1-8	P0CX22	1796 aa		4.96	□□□□□ -1.62
PRE9	YGR135W	NUP188	P52593	1655 aa	Known RBP	4.96	□□□□□ -1.62
PRE9	YGR135W	ATP4	P05626	244 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
PRE9	YGR135W	TOP3	P13099	656 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	PRP5	P21372	849 aa	Predicted RBP	4.95	□□□□□ -1.62
PRE9	YGR135W	LIP5	P32875	414 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	DOM34	P33309	386 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	TYS1	P36421	394 aa	Known RBP	4.95	□□□□□ -1.62
PRE9	YGR135W	BAP2	P38084	609 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	RDH54	P38086	958 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	GPG1	P53130	126 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	YGR021W	P53212	290 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	HFD1	Q04458	532 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	AOS1	Q06624	347 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	YDR306C	Q06640	478 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	TRE2	Q08693	809 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	YLL054C	Q12244	843 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	MPD2	Q99316	277 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	RAD9	P14737	1309 aa		4.95	□□□□□ -1.62
PRE9	YGR135W	CYC7	P00045	113 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	DBP5	P20449	482 aa	Known RBP	4.94	□□□□□ -1.62
PRE9	YGR135W	MSB1	P21339	1137 aa	Known RBP	4.94	□□□□□ -1.62
PRE9	YGR135W	RAD53	P22216	821 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	AAR2	P32357	355 aa	Predicted RBP	4.94	□□□□□ -1.62
PRE9	YGR135W	EUG1	P32474	517 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.94	□□□□□ -1.62	not detected
PRE9	YGR135W	HBS1	P32769	611 aa	Known RBP	4.94	□□□□□ -1.62
PRE9	YGR135W	YBR071W	P38243	211 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	PEA2	P40091	420 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	AIM21	P40563	679 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	CNN1	P43618	361 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	GCV1	P48015	400 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	PIL1	P53252	339 aa	Known RBP	4.94	□□□□□ -1.62
PRE9	YGR135W	COG6	P53959	839 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	RAT1	Q02792	1006 aa	Known RBP	4.94	□□□□□ -1.62
PRE9	YGR135W	LCD1	Q04377	747 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	YMR074C	Q04773	145 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	RTT109	Q07794	436 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	YIG1	Q08956	461 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	YOR223W	Q12015	292 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	YPL066W	Q12194	479 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	MDM12	Q92328	271 aa		4.94	□□□□□ -1.62
PRE9	YGR135W	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.93	□□□□□ -1.62	not detected
PRE9	YGR135W	MTC2	P34246	357 aa		4.93	□□□□□ -1.62
PRE9	YGR135W	EXO5	P38289	585 aa		4.93	□□□□□ -1.62
PRE9	YGR135W	SAH1	P39954	449 aa	Known RBP	4.93	□□□□□ -1.62
PRE9	YGR135W	RRT14	P40470	206 aa		4.93	□□□□□ -1.62
PRE9	YGR135W	RSC1	P53236	928 aa		4.93	□□□□□ -1.62
PRE9	YGR135W	COG4	Q06096	861 aa		4.93	□□□□□ -1.62
PRE9	YGR135W	YPR071W	Q12346	211 aa		4.93	□□□□□ -1.62
PRE9	YGR135W	ROM2	P51862	1356 aa	Known RBP	4.92	□□□□□ -1.62
PRE9	YGR135W	SST2	P11972	698 aa	Known RBP	4.92	□□□□□ -1.62
PRE9	YGR135W	PPH3	P32345	308 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	TFC4	P33339	1025 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	ADD66	P36040	267 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	GPP1	P41277	250 aa	Known RBP	4.92	□□□□□ -1.62
PRE9	YGR135W	SEC26	P41810	973 aa	Known RBP	4.92	□□□□□ -1.62
PRE9	YGR135W	UBP6	P43593	499 aa	Known RBP	4.92	□□□□□ -1.62
PRE9	YGR135W	TY4A-J	P47023	414 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	YNR063W	P53749	607 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	MDG1	P53885	366 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	COG8	Q04632	607 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	BRE4	Q07660	1125 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	YLR001C	Q07895	862 aa		4.92	□□□□□ -1.62
PRE9	YGR135W	RAD18	P10862	487 aa		4.91	□□□□□ -1.62
PRE9	YGR135W	MSD1	P15179	658 aa	Known RBP	4.91	□□□□□ -1.62
PRE9	YGR135W	RKM3	P38222	552 aa		4.91	□□□□□ -1.62
PRE9	YGR135W	NOC2	P39744	710 aa	Known RBP	4.91	□□□□□ -1.62
PRE9	YGR135W	HNT2	P49775	206 aa		4.91	□□□□□ -1.62
PRE9	YGR135W	YNL034W	P53963	612 aa		4.91	□□□□□ -1.62
PRE9	YGR135W	YNL018C	P53976	612 aa		4.91	□□□□□ -1.62
PRE9	YGR135W	TAP42	Q04372	366 aa		4.91	□□□□□ -1.62
PRE9	YGR135W	HTS1	P07263	546 aa	Known RBP	4.9	□□□□□ -1.63
PRE9	YGR135W	TY1A-LR4	P0C2I8	440 aa	Known RBP	4.9	□□□□□ -1.63
PRE9	YGR135W	TY1A-DR6	P0CX70	440 aa		4.9	□□□□□ -1.63
PRE9	YGR135W	TY1A-ER1	P0CX71	440 aa		4.9	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms