RNA–Protein interactions for RNA: YGR048W

UFD1, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene UFD1, Length 1,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UFD1YGR048W PYC2P32327 1180 aaKnown RBP8.57□□□□□ -1.04
UFD1YGR048W NUP120P35729 1037 aa8.57□□□□□ -1.04
UFD1YGR048W SPP381P38282 291 aaPredicted RBP8.57□□□□□ -1.04
UFD1YGR048W ATG3P40344 310 aa8.57□□□□□ -1.04
UFD1YGR048W BRE2P43132 505 aa8.57□□□□□ -1.04
UFD1YGR048W STB2P46679 850 aa8.57□□□□□ -1.04
UFD1YGR048W SGM1P47166 707 aa8.57□□□□□ -1.04
UFD1YGR048W SYH1Q02875 849 aaKnown RBP8.57□□□□□ -1.04
UFD1YGR048W ATP25Q03153 612 aa8.57□□□□□ -1.04
UFD1YGR048W MUB1Q03162 620 aa8.57□□□□□ -1.04
UFD1YGR048W SPO71Q03868 1245 aa8.57□□□□□ -1.04
UFD1YGR048W TAF9Q05027 157 aa8.57□□□□□ -1.04
UFD1YGR048W YDR341CQ05506 607 aaKnown RBP8.57□□□□□ -1.04
UFD1YGR048W SCM3Q12334 223 aa8.57□□□□□ -1.04
UFD1YGR048W RIB2Q12362 591 aaKnown RBP8.57□□□□□ -1.04
UFD1YGR048W RTP1Q12751 981 aa8.57□□□□□ -1.04
UFD1YGR048W MATALPHA2P0CY08 210 aa8.56□□□□□ -1.04
UFD1YGR048W HMLALPHA2P0CY09 210 aa8.56□□□□□ -1.04
UFD1YGR048W PYC1P11154 1178 aaKnown RBP8.56□□□□□ -1.04
UFD1YGR048W RAD57P25301 460 aa8.56□□□□□ -1.04
UFD1YGR048W BUD23P25627 275 aaPredicted RBP8.56□□□□□ -1.04
UFD1YGR048W KIP1P28742 1111 aa8.56□□□□□ -1.04
UFD1YGR048W KIP2P28743 706 aa8.56□□□□□ -1.04
UFD1YGR048W RPC34P32910 317 aa8.56□□□□□ -1.04
UFD1YGR048W BOI1P38041 980 aaKnown RBP8.56□□□□□ -1.04
UFD1YGR048W YBR287WP38355 427 aa8.56□□□□□ -1.04
UFD1YGR048W GUA1P38625 525 aaKnown RBP8.56□□□□□ -1.04
UFD1YGR048W TIF4631P39935 952 aaKnown RBP8.56□□□□□ -1.04
UFD1YGR048W SHQ1P40486 507 aaPredicted RBP8.56□□□□□ -1.04
UFD1YGR048W BUD6P41697 788 aa8.56□□□□□ -1.04
UFD1YGR048W YKE2P52553 114 aa8.56□□□□□ -1.04
UFD1YGR048W MCM6P53091 1017 aaKnown RBP8.56□□□□□ -1.04
UFD1YGR048W MRPS35P53292 345 aa8.56□□□□□ -1.04
UFD1YGR048W NOP15P53927 220 aaPredicted RBP8.56□□□□□ -1.04
UFD1YGR048W VTI1Q04338 217 aa8.56□□□□□ -1.04
UFD1YGR048W ITT1Q04638 464 aa8.56□□□□□ -1.04
UFD1YGR048W PIG1Q06216 648 aa8.56□□□□□ -1.04
UFD1YGR048W MEU1Q07938 337 aaKnown RBP RIP-Chip data8.56□□□□□ -1.04not detected
UFD1YGR048W RAD59Q12223 238 aa8.56□□□□□ -1.04
UFD1YGR048W ENO1P00924 437 aaKnown RBP8.55□□□□□ -1.04
UFD1YGR048W SBP1P10080 294 aaKnown RBP8.55□□□□□ -1.04
UFD1YGR048W MSB1P21339 1137 aaKnown RBP8.55□□□□□ -1.04
UFD1YGR048W SLA2P33338 968 aa8.55□□□□□ -1.04
UFD1YGR048W OCT1P35999 772 aa8.55□□□□□ -1.04
UFD1YGR048W YBR062CP38239 180 aa8.55□□□□□ -1.04
UFD1YGR048W YBR242WP38331 238 aa8.55□□□□□ -1.04
UFD1YGR048W SIP5P40210 489 aaKnown RBP8.55□□□□□ -1.04
UFD1YGR048W MET18P40469 1032 aa8.55□□□□□ -1.04
UFD1YGR048W LAM5P43560 674 aa8.55□□□□□ -1.04
UFD1YGR048W FYV8P46949 817 aaKnown RBP8.55□□□□□ -1.04
UFD1YGR048W HEH2Q03281 663 aa8.55□□□□□ -1.04
UFD1YGR048W UTP5Q04177 643 aaKnown RBP8.55□□□□□ -1.04
UFD1YGR048W FUS2Q05670 677 aa8.55□□□□□ -1.04
UFD1YGR048W YLR407WQ06070 228 aa8.55□□□□□ -1.04
UFD1YGR048W NSE1Q07913 336 aa8.55□□□□□ -1.04
UFD1YGR048W WHI5Q12416 295 aa8.55□□□□□ -1.04
UFD1YGR048W RSF2P46974 1380 aa8.55□□□□□ -1.04
UFD1YGR048W POM152P39685 1337 aa8.54□□□□□ -1.04
UFD1YGR048W RSR1P13856 272 aa8.54□□□□□ -1.04
UFD1YGR048W PWP1P21304 576 aaKnown RBP8.54□□□□□ -1.04
UFD1YGR048W DPB2P24482 689 aaPredicted RBP8.54□□□□□ -1.04
UFD1YGR048W GCG1P32656 232 aaKnown RBP8.54□□□□□ -1.04
UFD1YGR048W UTP11P34247 250 aaPredicted RBP8.54□□□□□ -1.04
UFD1YGR048W YKR015CP36111 568 aa8.54□□□□□ -1.04
UFD1YGR048W BRL1P38770 471 aa8.54□□□□□ -1.04
UFD1YGR048W PEX18P38855 283 aa8.54□□□□□ -1.04
UFD1YGR048W YHB1P39676 399 aaKnown RBP8.54□□□□□ -1.04
UFD1YGR048W BOI2P39969 1040 aa8.54□□□□□ -1.04
UFD1YGR048W TDA10P42938 290 aa8.54□□□□□ -1.04
UFD1YGR048W YGL176CP46945 554 aa8.54□□□□□ -1.04
UFD1YGR048W YJR039WP47107 1121 aa8.54□□□□□ -1.04
UFD1YGR048W ECL1P48235 211 aa8.54□□□□□ -1.04
UFD1YGR048W OPY2Q06810 360 aa8.54□□□□□ -1.04
UFD1YGR048W NEW1Q08972 1196 aaKnown RBP8.54□□□□□ -1.04
UFD1YGR048W CLF1Q12309 687 aaPredicted RBP8.54□□□□□ -1.04
UFD1YGR048W SSC1P0CS90 654 aaKnown RBP8.53□□□□□ -1.04
UFD1YGR048W THR1P17423 357 aaKnown RBP8.53□□□□□ -1.04
UFD1YGR048W VMA4P22203 233 aaKnown RBP8.53□□□□□ -1.04
UFD1YGR048W ASH1P34233 588 aa8.53□□□□□ -1.04
UFD1YGR048W SHM1P37292 490 aaPredicted RBP8.53□□□□□ -1.04
UFD1YGR048W CCT2P39076 527 aaKnown RBP8.53□□□□□ -1.04
UFD1YGR048W YGR122WP53272 402 aa8.53□□□□□ -1.04
UFD1YGR048W RAT1Q02792 1006 aaKnown RBP8.53□□□□□ -1.04
UFD1YGR048W USA1Q03714 838 aa8.53□□□□□ -1.04
UFD1YGR048W NCA2Q12374 616 aa8.53□□□□□ -1.04
UFD1YGR048W PET494P07390 489 aaPredicted RBP8.52□□□□□ -1.05
UFD1YGR048W BAS1P22035 811 aa8.52□□□□□ -1.05
UFD1YGR048W SPO11P23179 398 aa8.52□□□□□ -1.05
UFD1YGR048W SSE1P32589 693 aaKnown RBP8.52□□□□□ -1.05
UFD1YGR048W FBP26P32604 452 aa8.52□□□□□ -1.05
UFD1YGR048W DUR3P33413 735 aa8.52□□□□□ -1.05
UFD1YGR048W IXR1P33417 597 aa8.52□□□□□ -1.05
UFD1YGR048W NTH2P35172 780 aa8.52□□□□□ -1.05
UFD1YGR048W CTM1P38818 585 aa8.52□□□□□ -1.05
UFD1YGR048W YGR266WP53326 701 aa8.52□□□□□ -1.05
UFD1YGR048W SWP1Q02795 286 aa8.52□□□□□ -1.05
UFD1YGR048W TMA64Q04600 565 aaKnown RBP8.52□□□□□ -1.05
UFD1YGR048W YIG1Q08956 461 aa8.52□□□□□ -1.05
UFD1YGR048W GET4Q12125 312 aa8.52□□□□□ -1.05
UFD1YGR048W RRP6Q12149 733 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 5,963 RNA–protein pairs in 124.8 ms