RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	MRC1	P25588	1096 aa		6.05	□□□□□ -1.44
CAF16	YFL028C	YBR238C	P38330	731 aa	Known RBP	6.05	□□□□□ -1.44
CAF16	YFL028C	BUD9	P53226	547 aa		6.05	□□□□□ -1.44
CAF16	YFL028C	YGR283C	P53336	341 aa	Predicted RBP	6.05	□□□□□ -1.44
CAF16	YFL028C	MDM38	Q08179	573 aa		6.05	□□□□□ -1.44
CAF16	YFL028C	SRB8	P25648	1427 aa		6.05	□□□□□ -1.44
CAF16	YFL028C	TYS1	P36421	394 aa	Known RBP	6.04	□□□□□ -1.44
CAF16	YFL028C	BAP2	P38084	609 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	CCZ1	P38273	704 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	PAF1	P38351	445 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	TSL1	P38427	1098 aa	Known RBP	6.04	□□□□□ -1.44
CAF16	YFL028C	YHL012W	P38709	493 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	YJR120W	P47157	116 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	NIT3	P49954	291 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	GPG1	P53130	126 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	RSC3	Q06639	885 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	ENV7	Q12003	364 aa		6.04	□□□□□ -1.44
CAF16	YFL028C	YOR093C	Q12275	1648 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	IKI3	Q06706	1349 aa	Known RBP	6.03	□□□□□ -1.44
CAF16	YFL028C	TOP1	P04786	769 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	EMC3	P36039	253 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	NUG1	P40010	520 aa	Known RBP	6.03	□□□□□ -1.44
CAF16	YFL028C	YER158C	P40095	573 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	GYP7	P48365	746 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	DAM1	P53267	343 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	MET7	Q08645	548 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	YLL058W	Q12198	575 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	BNR1	P40450	1375 aa		6.03	□□□□□ -1.44
CAF16	YFL028C	AI3	P03877	415 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	PER1	P25625	357 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	PCL2	P25693	308 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	CDC48	P25694	835 aa	Known RBP	6.02	□□□□□ -1.45
CAF16	YFL028C	STO1	P34160	861 aa	Known RBP	6.02	□□□□□ -1.45
CAF16	YFL028C	MTC2	P34246	357 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	WHI3	P34761	661 aa	Known RBP	6.02	□□□□□ -1.45
CAF16	YFL028C	GIC1	P38785	314 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	AKR1	P39010	764 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	PIK1	P39104	1066 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	NPP2	P39997	493 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	MGS1	P40151	587 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	MET13	P53128	600 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	YDR514C	Q04408	483 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	YPR196W	Q06595	470 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	RSB1	Q08417	382 aa		6.02	□□□□□ -1.45
CAF16	YFL028C	SFL1	P20134	766 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	NAM7	P30771	971 aa	Known RBP	6.01	□□□□□ -1.45
CAF16	YFL028C	YKR078W	P36158	585 aa	Known RBP	6.01	□□□□□ -1.45
CAF16	YFL028C	NIT1	P40447	199 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	MMM1	P41800	426 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	TY4A-J	P47023	414 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	PRY1	P47032	299 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	SFB2	P53953	876 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	SRT1	Q03175	343 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	TDA6	Q06466	467 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	THI72	Q08579	599 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	YVC1	Q12324	675 aa		6.01	□□□□□ -1.45
CAF16	YFL028C	TRK2	P28584	889 aa		6	□□□□□ -1.45
CAF16	YFL028C	CAF16	P43569	289 aa		6	□□□□□ -1.45
CAF16	YFL028C	MTC3	P53077	123 aa		6	□□□□□ -1.45
CAF16	YFL028C	ATP25	Q03153	612 aa		6	□□□□□ -1.45
CAF16	YFL028C	HFD1	Q04458	532 aa		6	□□□□□ -1.45
CAF16	YFL028C	SSM4	P40318	1319 aa		5.99	□□□□□ -1.45
CAF16	YFL028C	MPH2	P0CD99	609 aa		5.99	□□□□□ -1.45
CAF16	YFL028C	SAM35	P14693	329 aa		5.99	□□□□□ -1.45
CAF16	YFL028C	YEL1	P34225	687 aa		5.99	□□□□□ -1.45
CAF16	YFL028C	TPM2	P40414	161 aa		5.99	□□□□□ -1.45
CAF16	YFL028C	GPP1	P41277	250 aa	Known RBP	5.99	□□□□□ -1.45
CAF16	YFL028C	MTQ2	Q03920	221 aa	Predicted RBP	5.99	□□□□□ -1.45
CAF16	YFL028C	NBA1	Q08229	501 aa	Known RBP	5.99	□□□□□ -1.45
CAF16	YFL028C	ACE2	P21192	770 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	RFA1	P22336	621 aa	Known RBP	5.98	□□□□□ -1.45
CAF16	YFL028C	SRO9	P25567	434 aa	Known RBP	5.98	□□□□□ -1.45
CAF16	YFL028C	FUN30	P31380	1131 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	PRP19	P32523	503 aa	Known RBP	5.98	□□□□□ -1.45
CAF16	YFL028C	MDL2	P33311	773 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	MCD4	P36051	919 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	RRT14	P40470	206 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	CIT3	P43635	486 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	HFM1	P51979	1187 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	AIM14	P53109	570 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	ARI1	P53111	347 aa	Known RBP	5.98	□□□□□ -1.45
CAF16	YFL028C	PEX8	P53248	589 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	SDH1	Q00711	640 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	GUD1	Q07729	489 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	OSW2	Q12202	724 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	SVS1	Q12254	260 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	DNF3	Q12674	1656 aa		5.98	□□□□□ -1.45
CAF16	YFL028C	EUG1	P32474	517 aa		5.97	□□□□□ -1.45
CAF16	YFL028C	MCX1	P38323	520 aa	Predicted RBP	5.97	□□□□□ -1.45
CAF16	YFL028C	NOP2	P40991	618 aa	Known RBP	5.97	□□□□□ -1.45
CAF16	YFL028C	YJR096W	P47137	282 aa		5.97	□□□□□ -1.45
CAF16	YFL028C	TAD1	P53065	400 aa		5.97	□□□□□ -1.45
CAF16	YFL028C	SNP1	Q00916	300 aa	Predicted RBP	5.97	□□□□□ -1.45
CAF16	YFL028C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	5.97	□□□□□ -1.45	not detected
CAF16	YFL028C	REH1	Q06709	432 aa		5.97	□□□□□ -1.45
CAF16	YFL028C	RSC58	Q07979	502 aa		5.97	□□□□□ -1.45
CAF16	YFL028C	DAL7	P21826	554 aa		5.96	□□□□□ -1.46
CAF16	YFL028C	HOG1	P32485	435 aa		5.96	□□□□□ -1.46
CAF16	YFL028C	AIM26	P32858	118 aa		5.96	□□□□□ -1.46
CAF16	YFL028C	YBR071W	P38243	211 aa		5.96	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms