RNA–Protein interactions for RNA: ENST00000635776.1

SCN1A-210, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 10,107 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-210ENST00000635776 BCL11BQ9C0K0 894 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 IFIT1P09914 478 aaKnown RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 CASTP20810 708 aaKnown RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 CHAF1AQ13111 956 aaPredicted RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 MCMDC2Q4G0Z9 681 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 UBE3BQ7Z3V4 1068 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 DDX54Q8TDD1 881 aaKnown RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 NOL10Q9BSC4 688 aaKnown RBP5.4□□□□□ -1.54
SCN1A-210ENST00000635776 ANKRD18BA2A2Z9 1011 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 PARP10Q53GL7 1025 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 TSPY26PQ9H489 355 aa5.4□□□□□ -1.54
SCN1A-210ENST00000635776 EYA2O00167 538 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 STRN4Q9NRL3 753 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 ABCC12Q96J65 1359 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 IMMTQ16891 758 aaKnown RBP5.4□□□□□ -1.55
SCN1A-210ENST00000635776 PRPF40BQ6NWY9 871 aaKnown RBP5.4□□□□□ -1.55
SCN1A-210ENST00000635776 LARP1BQ659C4 914 aaKnown RBP5.4□□□□□ -1.55
SCN1A-210ENST00000635776 JMYQ8N9B5 988 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 IL17RAQ96F46 866 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 SLIT3O75094 1523 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 TRIM29Q14134 588 aa5.4□□□□□ -1.55
SCN1A-210ENST00000635776 WASF1Q92558 559 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 DNAJC2Q99543 621 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 LLPHQ9BRT6 129 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 RBM42Q9BTD8 480 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 HOOK1Q9UJC3 728 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 HEG1Q9ULI3 1381 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 ZSCAN22P10073 491 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 SSFA2P28290 1259 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 GNL2Q13823 731 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 LMBR1LQ6UX01 489 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CCDC73Q6ZRK6 1079 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 DNAJC5Q9H3Z4 198 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 STX6O43752 255 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 ALDH8A1Q9H2A2 487 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CNNM1Q9NRU3 951 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 MYO5BQ9ULV0 1848 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 FMN2Q9NZ56 1722 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 ERICH2A1L162 156 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CTAGE5O15320 804 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 ZNF445P59923 1031 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 UBE2HP62256 183 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 NKX1-1Q15270 411 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 WASHC4Q2M389 1173 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 TNNI3KQ59H18 835 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CAVIN1Q6NZI2 390 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 NEK1Q96PY6 1258 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 FPGT-TNNI3KV9GXZ4 949 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 VPS37CA5D8V6 355 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 BRD1O95696 1058 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 TRIM28Q13263 835 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 PDZRN4Q6ZMN7 1036 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CCDC192P0DO97 292 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 GTF2E1P29083 439 aaPredicted RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CCDC183Q5T5S1 534 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 AMOTL1Q8IY63 956 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 NAT10Q9H0A0 1025 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 BOLA2Q9H3K6 86 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 SUCLG2Q96I99 432 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 DSCC1Q9BVC3 393 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 BICC1Q9H694 974 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 THRAP3Q9Y2W1 955 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 RBM8AQ9Y5S9 174 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 XBP1P17861 261 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 IGHMBP2P38935 993 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CHRNA2Q15822 529 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CWF19L2Q2TBE0 894 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 NOL8Q76FK4 1167 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 RUFY3Q7L099 469 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 SIL1Q9H173 461 aa5.39□□□□□ -1.55
SCN1A-210ENST00000635776 DDX19AQ9NUU7 478 aaKnown RBP5.39□□□□□ -1.55
SCN1A-210ENST00000635776 CCDC8Q9H0W5 538 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 KBTBD3Q8NAB2 608 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 RGS22Q8NE09 1264 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 OTUD7AQ8TE49 926 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SETD1BQ9UPS6 1966 aaKnown RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 RIMS1Q86UR5 1692 aaKnown RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 PCCAP05165 728 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SAFBQ15424 915 aaKnown RBP eCLIP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SF3A1Q15459 793 aaKnown RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 RABL6Q3YEC7 729 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 RBM33Q96EV2 1170 aaKnown RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 NAP1L2Q9ULW6 460 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 A0A0G2JS52 829 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 TCIRG1Q13488 830 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SLC39A6Q13433 755 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 UPF3BQ9BZI7 483 aaKnown RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SALL3Q9BXA9 1300 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 LRSAM1Q6UWE0 723 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 BRINP3Q76B58 766 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 MAP4K1Q92918 833 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 RNF41Q9H4P4 317 aaPredicted RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 CCDC9Q9Y3X0 531 aaKnown RBP5.38□□□□□ -1.55
SCN1A-210ENST00000635776 ADCY9O60503 1353 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SLC5A1P13866 664 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SASS6Q6UVJ0 657 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 SNX14Q9Y5W7 946 aa5.38□□□□□ -1.55
SCN1A-210ENST00000635776 CCDC196A0A1B0GTZ2 297 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms