RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ATP2B2Q01814 1243 aa10.53□□□□□ -0.72
PDLIM5-222ENST00000615540 IQSEC3Q9UPP2 1182 aaPredicted RBP10.52□□□□□ -0.72
PDLIM5-222ENST00000615540 U3KPZ7 1027 aaPredicted RBP10.52□□□□□ -0.72
PDLIM5-222ENST00000615540 SETBP1Q9Y6X0 1596 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 AK2P54819 239 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 CTNNA3Q9UI47 895 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 EIF4A1P60842 406 aaKnown RBP10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 PIK3C2BO00750 1634 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 ALDH1L1O75891 902 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 IL2RBP14784 551 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 TTLL5Q6EMB2 1281 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 ZNF594Q96JF6 807 aaPredicted RBP10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 ATP6V1AP38606 617 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 ZNF790Q6PG37 636 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 LDHAL6AQ6ZMR3 332 aa10.52□□□□□ -0.73
PDLIM5-222ENST00000615540 GOLGA8BA8MQT2 603 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 XBP1P17861 261 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 BRPF1P55201 1214 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 USP48Q86UV5 1035 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 NEK1Q96PY6 1258 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 RAB3GAP1Q15042 981 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 SLC5A1P13866 664 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 CCDC183Q5T5S1 534 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 Q6ZUG5 572 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 SH2B1Q9NRF2 756 aaPredicted RBP10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 ZNF213O14771 459 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 SLC52A2Q9HAB3 445 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 NEXMIFQ5QGS0 1516 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 UBAC1Q9BSL1 405 aa10.51□□□□□ -0.73
PDLIM5-222ENST00000615540 ZPR1O75312 459 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 SLC3A2P08195 630 aaKnown RBP10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 AATKQ6ZMQ8 1374 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 NCBP3Q53F19 620 aaKnown RBP10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 HELBQ8NG08 1087 aaPredicted RBP10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 SIRT1Q96EB6 747 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 BTG4Q9NY30 223 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 ANKIB1Q9P2G1 1089 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 PCDH11XQ9BZA7 1347 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 PCDH11YQ9BZA8 1340 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 TPM3P06753 285 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 RTL1A6NKG5 1358 aa10.5□□□□□ -0.73
PDLIM5-222ENST00000615540 POLR3DP05423 398 aaPredicted RBP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 TPM2P07951 284 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 MAP3K11Q16584 847 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 DCAF5Q96JK2 942 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 FAM227BQ96M60 508 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 LRRC7Q96NW7 1537 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 ZSCAN22P10073 491 aaPredicted RBP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 PROSER3Q2NL68 480 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 NAPBQ9H115 298 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 LMTK2Q8IWU2 1503 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 IKQ13123 557 aaPredicted RBP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 CREB3L3Q68CJ9 461 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 PAG1Q9NWQ8 432 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 CDK12Q9NYV4 1490 aaPredicted RBP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 RBM25P49756 843 aaKnown RBP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 TRIM22Q8IYM9 498 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 BRF1Q92994 677 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 USP25Q9UHP3 1055 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 XRCC6P12956 609 aaKnown RBP eCLIP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 RBM5P52756 815 aaKnown RBP eCLIP10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 GIMAP6Q6P9H5 292 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 LINS1Q8NG48 757 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 CFAP45Q9UL16 551 aa10.49□□□□□ -0.73
PDLIM5-222ENST00000615540 NGLY1Q96IV0 654 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 A1BGP04217 495 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 KIAA0232Q92628 1395 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 TPM1P09493 284 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 ISM2Q6H9L7 571 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 RIMBP3CA6NJZ7 1639 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 RIMBP3BA6NNM3 1639 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 RIMBP3Q9UFD9 1639 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 ESPNB1AK53 854 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 SERPINC1P01008 464 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 DNM1Q05193 864 aaKnown RBP10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 TSR1Q2NL82 804 aaKnown RBP10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 PPP1R1BQ9UD71 204 aaPredicted RBP10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 MCMDC2Q4G0Z9 681 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 MYO3AQ8NEV4 1616 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 TTC41PQ6P2S7 1318 aa10.48□□□□□ -0.73
PDLIM5-222ENST00000615540 CAVIN4Q5BKX8 364 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 ZNF652Q9Y2D9 606 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 RANBP6O60518 1105 aaKnown RBP10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 C8orf76Q96K31 380 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 ZNF219Q9P2Y4 722 aaPredicted RBP10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 ARHGAP31Q2M1Z3 1444 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 APOBRQ0VD83 1088 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 ZNF830Q96NB3 372 aaPredicted RBP10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 METTL22Q9BUU2 404 aaPredicted RBP10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 SNX14Q9Y5W7 946 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 GOLGA8AA7E2F4 631 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 MAP3K12Q12852 859 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 FAM89AQ96GI7 184 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 SLC12A7Q9Y666 1083 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 PTPRMP28827 1452 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 CDKL5O76039 1030 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 DZIP3Q86Y13 1208 aaKnown RBP10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 C8orf37Q96NL8 207 aa10.47□□□□□ -0.73
PDLIM5-222ENST00000615540 RUFY3Q7L099 469 aa10.46□□□□□ -0.73
PDLIM5-222ENST00000615540 MICU3Q86XE3 530 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms