RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 HLFQ16534 295 aa21.76■■□□□ 1.07
CLK3-223ENST00000568488 SAPCD2Q86UD0 394 aa21.76■■□□□ 1.07
CLK3-223ENST00000568488 RPGRQ92834 1020 aaKnown RBP21.76■■□□□ 1.07
CLK3-223ENST00000568488 CASP8AP2Q9UKL3 1982 aa21.76■■□□□ 1.07
CLK3-223ENST00000568488 CC2D1BQ5T0F9 858 aaKnown RBP21.75■■□□□ 1.07
CLK3-223ENST00000568488 NUTM1Q86Y26 1132 aa21.75■■□□□ 1.07
CLK3-223ENST00000568488 NIM1KQ8IY84 436 aa21.75■■□□□ 1.07
CLK3-223ENST00000568488 ZNF408Q9H9D4 720 aa21.75■■□□□ 1.07
CLK3-223ENST00000568488 ADARB2Q9NS39 739 aaKnown RBP21.75■■□□□ 1.07
CLK3-223ENST00000568488 COL4A5P29400 1685 aa21.75■■□□□ 1.07
CLK3-223ENST00000568488 TRPM7Q96QT4 1865 aa21.75■■□□□ 1.07
CLK3-223ENST00000568488 SIPA1L3O60292 1781 aaPredicted RBP21.74■■□□□ 1.07
CLK3-223ENST00000568488 NBPF26B4DH59 902 aa21.74■■□□□ 1.07
CLK3-223ENST00000568488 CNGB1Q14028 1251 aaPredicted RBP21.74■■□□□ 1.07
CLK3-223ENST00000568488 CIAPIN1Q6FI81 312 aa21.74■■□□□ 1.07
CLK3-223ENST00000568488 NBPF10Q6P3W6 841 aaKnown RBP21.74■■□□□ 1.07
CLK3-223ENST00000568488 NBPF15Q8N660 670 aa21.74■■□□□ 1.07
CLK3-223ENST00000568488 BRPF1P55201 1214 aaPredicted RBP21.73■■□□□ 1.07
CLK3-223ENST00000568488 GLIS2Q9BZE0 524 aaPredicted RBP21.73■■□□□ 1.07
CLK3-223ENST00000568488 CEMIPQ8WUJ3 1361 aa21.73■■□□□ 1.07
CLK3-223ENST00000568488 TNRC18O15417 2968 aaPredicted RBP21.72■■□□□ 1.07
CLK3-223ENST00000568488 SNED1Q8TER0 1413 aa21.72■■□□□ 1.07
CLK3-223ENST00000568488 CRY2Q49AN0 593 aa21.72■■□□□ 1.07
CLK3-223ENST00000568488 NGEFQ8N5V2 710 aa21.72■■□□□ 1.07
CLK3-223ENST00000568488 NYXQ9GZU5 481 aa21.72■■□□□ 1.07
CLK3-223ENST00000568488 RGL2O15211 777 aa21.71■■□□□ 1.07
CLK3-223ENST00000568488 PPIP5K2O43314 1243 aa21.71■■□□□ 1.07
CLK3-223ENST00000568488 GRIPAP1Q4V328 841 aa21.71■■□□□ 1.07
CLK3-223ENST00000568488 PHACTR3Q96KR7 559 aa21.71■■□□□ 1.07
CLK3-223ENST00000568488 GPRC5DQ9NZD1 345 aa21.71■■□□□ 1.07
CLK3-223ENST00000568488 SLC51AQ86UW1 340 aa21.7■■□□□ 1.06
CLK3-223ENST00000568488 HHIPL1Q96JK4 782 aa21.7■■□□□ 1.06
CLK3-223ENST00000568488 ABCC12Q96J65 1359 aa21.7■■□□□ 1.06
CLK3-223ENST00000568488 PPEF1O14829 653 aaPredicted RBP21.69■■□□□ 1.06
CLK3-223ENST00000568488 RBM17Q96I25 401 aaKnown RBP21.69■■□□□ 1.06
CLK3-223ENST00000568488 TMX4Q9H1E5 349 aaPredicted RBP21.69■■□□□ 1.06
CLK3-223ENST00000568488 HOXA10P31260 410 aaPredicted RBP21.68■■□□□ 1.06
CLK3-223ENST00000568488 SOX10P56693 466 aa21.68■■□□□ 1.06
CLK3-223ENST00000568488 AOC3Q16853 763 aa21.68■■□□□ 1.06
CLK3-223ENST00000568488 RTF1Q92541 710 aaKnown RBP21.68■■□□□ 1.06
CLK3-223ENST00000568488 PRKAR2BP31323 418 aa21.67■■□□□ 1.06
CLK3-223ENST00000568488 GMPSP49915 693 aaPredicted RBP21.67■■□□□ 1.06
CLK3-223ENST00000568488 CXCL9Q07325 125 aa21.67■■□□□ 1.06
CLK3-223ENST00000568488 MCM10Q7L590 875 aa21.67■■□□□ 1.06
CLK3-223ENST00000568488 ZIC5Q96T25 663 aa21.67■■□□□ 1.06
CLK3-223ENST00000568488 NPC1L1Q9UHC9 1359 aa21.66■■□□□ 1.06
CLK3-223ENST00000568488 GPTP24298 496 aa21.66■■□□□ 1.06
CLK3-223ENST00000568488 BCL2L13Q9BXK5 485 aa21.66■■□□□ 1.06
CLK3-223ENST00000568488 NOGQ13253 232 aa21.65■■□□□ 1.06
CLK3-223ENST00000568488 CRAMP1Q96RY5 1269 aa21.65■■□□□ 1.06
CLK3-223ENST00000568488 ZNRF3Q9ULT6 936 aa21.65■■□□□ 1.06
CLK3-223ENST00000568488 CDC37L1Q7L3B6 337 aa21.64■■□□□ 1.05
CLK3-223ENST00000568488 HIRAP54198 1017 aaPredicted RBP21.63■■□□□ 1.05
CLK3-223ENST00000568488 HUNKP57058 714 aa21.63■■□□□ 1.05
CLK3-223ENST00000568488 DCTN1Q14203 1278 aa21.63■■□□□ 1.05
CLK3-223ENST00000568488 PGAP2Q9UHJ9 254 aa21.63■■□□□ 1.05
CLK3-223ENST00000568488 PDE4DIPQ5VU43 2346 aa21.62■■□□□ 1.05
CLK3-223ENST00000568488 KIF7Q2M1P5 1343 aa21.62■■□□□ 1.05
CLK3-223ENST00000568488 ERVV-1B6SEH8 477 aa21.62■■□□□ 1.05
CLK3-223ENST00000568488 PER1O15534 1290 aaPredicted RBP21.62■■□□□ 1.05
CLK3-223ENST00000568488 SUSD4Q5VX71 490 aa21.62■■□□□ 1.05
CLK3-223ENST00000568488 KIF6Q6ZMV9 814 aa21.62■■□□□ 1.05
CLK3-223ENST00000568488 USP48Q86UV5 1035 aa21.62■■□□□ 1.05
CLK3-223ENST00000568488 ZC3H15Q8WU90 426 aaKnown RBP21.62■■□□□ 1.05
CLK3-223ENST00000568488 RRP7AQ9Y3A4 280 aaKnown RBP21.62■■□□□ 1.05
CLK3-223ENST00000568488 COL3A1P02461 1466 aaPredicted RBP21.62■■□□□ 1.05
CLK3-223ENST00000568488 RAD17O75943 681 aa21.61■■□□□ 1.05
CLK3-223ENST00000568488 RSPH6AQ9H0K4 717 aa21.61■■□□□ 1.05
CLK3-223ENST00000568488 VPS33BQ9H267 617 aa21.61■■□□□ 1.05
CLK3-223ENST00000568488 MIS18AQ9NYP9 233 aa21.61■■□□□ 1.05
CLK3-223ENST00000568488 MAP3K15Q6ZN16 1313 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 TTLL7Q6ZT98 887 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 C3orf67Q6ZVT6 689 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 SUPT20HQ8NEM7 779 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 TRPM4Q8TD43 1214 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 ZBTB3Q9H5J0 574 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 ATP6V0A2Q9Y487 856 aa21.6■■□□□ 1.05
CLK3-223ENST00000568488 UBN2Q6ZU65 1347 aa21.59■■□□□ 1.05
CLK3-223ENST00000568488 DLK2Q6UY11 383 aa21.59■■□□□ 1.05
CLK3-223ENST00000568488 NLRP3Q96P20 1036 aa21.59■■□□□ 1.05
CLK3-223ENST00000568488 PCGF6Q9BYE7 350 aa21.59■■□□□ 1.05
CLK3-223ENST00000568488 CNOT7Q9UIV1 285 aaKnown RBP21.59■■□□□ 1.05
CLK3-223ENST00000568488 RIC1Q4ADV7 1423 aa21.58■■□□□ 1.05
CLK3-223ENST00000568488 MYL6BP14649 208 aa21.58■■□□□ 1.05
CLK3-223ENST00000568488 TNIP1Q15025 636 aa21.58■■□□□ 1.05
CLK3-223ENST00000568488 TAF7Q15545 349 aaPredicted RBP21.58■■□□□ 1.05
CLK3-223ENST00000568488 H7C1D1 291 aa21.57■■□□□ 1.04
CLK3-223ENST00000568488 TRPA1O75762 1119 aa21.57■■□□□ 1.04
CLK3-223ENST00000568488 KIF23Q02241 960 aaPredicted RBP21.57■■□□□ 1.04
CLK3-223ENST00000568488 PRPF38BQ5VTL8 546 aaKnown RBP21.57■■□□□ 1.04
CLK3-223ENST00000568488 RGMBQ6NW40 437 aa21.57■■□□□ 1.04
CLK3-223ENST00000568488 DPP8Q6V1X1 898 aaPredicted RBP21.57■■□□□ 1.04
CLK3-223ENST00000568488 SHTN1A0MZ66 631 aa21.56■■□□□ 1.04
CLK3-223ENST00000568488 CDHR2Q9BYE9 1310 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 NTSR2O95665 410 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 TRIM26Q12899 539 aaPredicted RBP21.55■■□□□ 1.04
CLK3-223ENST00000568488 PPP1R42Q7Z4L9 355 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 MPNDQ8N594 471 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 C2orf69Q8N8R5 385 aa21.55■■□□□ 1.04
CLK3-223ENST00000568488 CFAP53Q96M91 514 aa21.55■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms