RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 GPTP24298 496 aa15.34■□□□□ 0.05
USP3-220ENST00000561381 GTF2E1P29083 439 aaPredicted RBP15.34■□□□□ 0.05
USP3-220ENST00000561381 RIPK4P57078 832 aa15.34■□□□□ 0.05
USP3-220ENST00000561381 RALBP1Q15311 655 aa15.34■□□□□ 0.05
USP3-220ENST00000561381 CCDC93Q567U6 631 aa15.34■□□□□ 0.05
USP3-220ENST00000561381 ZNF277Q9NRM2 450 aaPredicted RBP15.34■□□□□ 0.05
USP3-220ENST00000561381 TSPYL4Q9UJ04 414 aa15.34■□□□□ 0.05
USP3-220ENST00000561381 UBN2Q6ZU65 1347 aa15.34■□□□□ 0.05
USP3-220ENST00000561381 DDX10Q13206 875 aaKnown RBP15.33■□□□□ 0.04
USP3-220ENST00000561381 KIF6Q6ZMV9 814 aa15.33■□□□□ 0.04
USP3-220ENST00000561381 POTEIP0CG38 1075 aa15.32■□□□□ 0.04
USP3-220ENST00000561381 POTEJP0CG39 1038 aa15.32■□□□□ 0.04
USP3-220ENST00000561381 PRKAR2AP13861 404 aaKnown RBP15.32■□□□□ 0.04
USP3-220ENST00000561381 EIF2S2P20042 333 aaKnown RBP15.32■□□□□ 0.04
USP3-220ENST00000561381 TMPOP42166 694 aaKnown RBP15.32■□□□□ 0.04
USP3-220ENST00000561381 FKBP4Q02790 459 aaKnown RBP eCLIP15.32■□□□□ 0.04
USP3-220ENST00000561381 SUSD4Q5VX71 490 aa15.32■□□□□ 0.04
USP3-220ENST00000561381 ANXA1P04083 346 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 PDIA6Q15084 440 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 PROSER3Q2NL68 480 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 CRY2Q49AN0 593 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 LRP10Q7Z4F1 713 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 SLC51AQ86UW1 340 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 CCDC146Q8IYE0 955 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 JMYQ8N9B5 988 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 NYXQ9GZU5 481 aa15.31■□□□□ 0.04
USP3-220ENST00000561381 ALDH1B1P30837 517 aa15.3■□□□□ 0.04
USP3-220ENST00000561381 ZNF34Q8IZ26 560 aa15.3■□□□□ 0.04
USP3-220ENST00000561381 ZNF541Q9H0D2 1346 aa15.3■□□□□ 0.04
USP3-220ENST00000561381 ERBB4Q15303 1308 aa15.29■□□□□ 0.04
USP3-220ENST00000561381 NEUROD2Q15784 382 aa15.29■□□□□ 0.04
USP3-220ENST00000561381 GIGYF2Q6Y7W6 1299 aaKnown RBP15.29■□□□□ 0.04
USP3-220ENST00000561381 C3orf67Q6ZVT6 689 aa15.29■□□□□ 0.04
USP3-220ENST00000561381 RTKN2Q8IZC4 609 aa15.29■□□□□ 0.04
USP3-220ENST00000561381 SYNE4Q8N205 404 aa15.29■□□□□ 0.04
USP3-220ENST00000561381 NECTIN2Q92692 538 aa15.29■□□□□ 0.04
USP3-220ENST00000561381 SNED1Q8TER0 1413 aa15.28■□□□□ 0.04
USP3-220ENST00000561381 MYBBP1AQ9BQG0 1328 aaKnown RBP15.28■□□□□ 0.04
USP3-220ENST00000561381 NTSR2O95665 410 aa15.28■□□□□ 0.04
USP3-220ENST00000561381 KRT24Q2M2I5 525 aa15.28■□□□□ 0.04
USP3-220ENST00000561381 CHADLQ6NUI6 762 aa15.28■□□□□ 0.04
USP3-220ENST00000561381 IBTKQ9P2D0 1353 aaPredicted RBP15.27■□□□□ 0.04
USP3-220ENST00000561381 HOXA10P31260 410 aaPredicted RBP15.27■□□□□ 0.04
USP3-220ENST00000561381 IARSP41252 1262 aaKnown RBP15.27■□□□□ 0.04
USP3-220ENST00000561381 RPGRQ92834 1020 aaKnown RBP15.27■□□□□ 0.04
USP3-220ENST00000561381 L3MBTL3Q96JM7 780 aaPredicted RBP15.27■□□□□ 0.04
USP3-220ENST00000561381 TAF1DQ9H5J8 278 aaPredicted RBP15.27■□□□□ 0.04
USP3-220ENST00000561381 TCERG1O14776 1098 aaKnown RBP15.26■□□□□ 0.03
USP3-220ENST00000561381 LMOD3Q0VAK6 560 aa15.26■□□□□ 0.03
USP3-220ENST00000561381 BABAM1Q9NWV8 329 aa15.26■□□□□ 0.03
USP3-220ENST00000561381 RIC1Q4ADV7 1423 aa15.26■□□□□ 0.03
USP3-220ENST00000561381 COL4A5P29400 1685 aa15.25■□□□□ 0.03
USP3-220ENST00000561381 IQCA1LA6NCM1 817 aa15.25■□□□□ 0.03
USP3-220ENST00000561381 FZD9O00144 591 aa15.25■□□□□ 0.03
USP3-220ENST00000561381 AIMP1Q12904 312 aaKnown RBP15.25■□□□□ 0.03
USP3-220ENST00000561381 COPS6Q7L5N1 327 aa15.25■□□□□ 0.03
USP3-220ENST00000561381 TRIM35Q9UPQ4 493 aa15.25■□□□□ 0.03
USP3-220ENST00000561381 LAS1LQ9Y4W2 734 aaKnown RBP15.25■□□□□ 0.03
USP3-220ENST00000561381 CHL1O00533 1208 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 PARP10Q53GL7 1025 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 PPP1R42Q7Z4L9 355 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 XAGE3Q8WTP9 111 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 RBM17Q96I25 401 aaKnown RBP15.24■□□□□ 0.03
USP3-220ENST00000561381 PSMD1Q99460 953 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 UTP14AQ9BVJ6 771 aaKnown RBP15.24■□□□□ 0.03
USP3-220ENST00000561381 ADAMTS8Q9UP79 889 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 SCN4AP35499 1836 aa15.24■□□□□ 0.03
USP3-220ENST00000561381 RNF123Q5XPI4 1314 aa15.23■□□□□ 0.03
USP3-220ENST00000561381 PPEF1O14829 653 aaPredicted RBP15.23■□□□□ 0.03
USP3-220ENST00000561381 WDR43Q15061 677 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP3-220ENST00000561381 EAPPQ56P03 285 aaPredicted RBP15.23■□□□□ 0.03
USP3-220ENST00000561381 COL13A1Q5TAT6 717 aaPredicted RBP15.23■□□□□ 0.03
USP3-220ENST00000561381 LDHDQ86WU2 507 aa15.23■□□□□ 0.03
USP3-220ENST00000561381 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
USP3-220ENST00000561381 RUNDC1Q96C34 613 aa15.23■□□□□ 0.03
USP3-220ENST00000561381 CRAMP1Q96RY5 1269 aa15.23■□□□□ 0.03
USP3-220ENST00000561381 SLC10A5Q5PT55 438 aa15.22■□□□□ 0.03
USP3-220ENST00000561381 CC2D2BQ6DHV5 1058 aa15.22■□□□□ 0.03
USP3-220ENST00000561381 NLRP3Q96P20 1036 aa15.22■□□□□ 0.03
USP3-220ENST00000561381 HACL1Q9UJ83 578 aa15.22■□□□□ 0.03
USP3-220ENST00000561381 PCNTO95613 3336 aa15.22■□□□□ 0.03
USP3-220ENST00000561381 PASKQ96RG2 1323 aa15.21■□□□□ 0.03
USP3-220ENST00000561381 HCLS1P14317 486 aaPredicted RBP15.21■□□□□ 0.03
USP3-220ENST00000561381 EPHX2P34913 555 aa15.21■□□□□ 0.03
USP3-220ENST00000561381 NLRP10Q86W26 655 aa15.21■□□□□ 0.03
USP3-220ENST00000561381 JDP2Q8WYK2 163 aa15.21■□□□□ 0.03
USP3-220ENST00000561381 DDX21Q9NR30 783 aaKnown RBP eCLIP15.21■□□□□ 0.03
USP3-220ENST00000561381 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
USP3-220ENST00000561381 CHPF2Q9P2E5 772 aa15.21■□□□□ 0.03
USP3-220ENST00000561381 MKRN1Q9UHC7 482 aaKnown RBP15.21■□□□□ 0.03
USP3-220ENST00000561381 ABCC4O15439 1325 aa15.2■□□□□ 0.02
USP3-220ENST00000561381 ITGBL1O95965 494 aaPredicted RBP15.2■□□□□ 0.02
USP3-220ENST00000561381 HSPA1AP0DMV8 641 aaKnown RBP15.2■□□□□ 0.02
USP3-220ENST00000561381 HSPA1BP0DMV9 641 aaKnown RBP15.2■□□□□ 0.02
USP3-220ENST00000561381 TCIRG1Q13488 830 aa15.2■□□□□ 0.02
USP3-220ENST00000561381 GPC2Q8N158 579 aa15.2■□□□□ 0.02
USP3-220ENST00000561381 LARGE2Q8N3Y3 721 aa15.2■□□□□ 0.02
USP3-220ENST00000561381 GJA3Q9Y6H8 435 aa15.2■□□□□ 0.02
USP3-220ENST00000561381 ANKRD36CQ5JPF3 1778 aa15.19■□□□□ 0.02
USP3-220ENST00000561381 EIF6P56537 245 aaKnown RBP15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms