RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	ZNF358	Q9NW07	568 aa		4.91	□□□□□ -1.62
SPG11-223	ENST00000560858	TAL1	P17542	331 aa	Predicted RBP	4.9	□□□□□ -1.63
SPG11-223	ENST00000560858	NOS3	P29474	1203 aa		4.9	□□□□□ -1.63
SPG11-223	ENST00000560858	FZD5	Q13467	585 aa		4.9	□□□□□ -1.63
SPG11-223	ENST00000560858	MSL1	Q68DK7	614 aa		4.9	□□□□□ -1.63
SPG11-223	ENST00000560858	PNMA5	Q96PV4	448 aa		4.9	□□□□□ -1.63
SPG11-223	ENST00000560858	RNF114	Q9Y508	228 aa		4.9	□□□□□ -1.63
SPG11-223	ENST00000560858	SOX11	P35716	441 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	GTF2I	P78347	998 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	IRF5	Q13568	498 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	TBCEL	Q5QJ74	424 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	LCE1D	Q5T752	114 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	ILDR2	Q71H61	639 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	KRTAP4-7	Q9BYR0	210 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	HCN4	Q9Y3Q4	1203 aa		4.89	□□□□□ -1.63
SPG11-223	ENST00000560858	PTCD1	O75127	700 aa	Known RBP	4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	FST	P19883	344 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	CD97	P48960	835 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	TYRO3	Q06418	890 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	HIF1A	Q16665	826 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	TNS4	Q8IZW8	715 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	HSH2D	Q96JZ2	352 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	SUSD3	Q96L08	255 aa		4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	DNAJB12	Q9NXW2	375 aa	Known RBP	4.88	□□□□□ -1.63
SPG11-223	ENST00000560858	EPHA4	P54764	986 aa		4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	PSMA6	P60900	246 aa	Known RBP	4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	NEUROD2	Q15784	382 aa		4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	FAM35A	Q86V20	835 aa		4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	WFDC8	Q8IUA0	241 aa		4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	MEGF10	Q96KG7	1140 aa		4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	PHACTR1	Q9C0D0	580 aa		4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	4.87	□□□□□ -1.63
SPG11-223	ENST00000560858	GSC2	O15499	205 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	HIRA	P54198	1017 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	GP2	P55259	537 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	SH3PXD2A	Q5TCZ1	1133 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	BTLA	Q7Z6A9	289 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	ZNF280C	Q8ND82	737 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	GSX2	Q9BZM3	304 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	AKTIP	Q9H8T0	292 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	FRRS1L	Q9P0K9	344 aa		4.86	□□□□□ -1.63
SPG11-223	ENST00000560858	SKI	P12755	728 aa		4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	ABL2	P42684	1182 aa		4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	CCIN	Q13939	588 aa		4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	ELMSAN1	Q6PJG2	1045 aa		4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	DZIP1L	Q8IYY4	767 aa	Known RBP	4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	NAGPA	Q9UK23	515 aa		4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	OAS3	Q9Y6K5	1087 aa	Known RBP	4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.85	□□□□□ -1.63
SPG11-223	ENST00000560858	CPB1	P15086	417 aa		4.84	□□□□□ -1.63
SPG11-223	ENST00000560858	BRPF1	P55201	1214 aa	Predicted RBP	4.84	□□□□□ -1.63
SPG11-223	ENST00000560858	TRIM50	Q86XT4	487 aa		4.84	□□□□□ -1.63
SPG11-223	ENST00000560858	TMEM130	Q8N3G9	435 aa		4.84	□□□□□ -1.63
SPG11-223	ENST00000560858	NFATC2IP	Q8NCF5	419 aa		4.84	□□□□□ -1.63
SPG11-223	ENST00000560858	GDPD2	Q9HCC8	539 aa		4.84	□□□□□ -1.63
SPG11-223	ENST00000560858	PIK3CD	O00329	1044 aa		4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	NFKB1	P19838	968 aa		4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	GRIK1	P39086	918 aa		4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	NCOA4	Q13772	614 aa		4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	DCAF11	Q8TEB1	546 aa		4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	TTC9	Q92623	222 aa		4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	MRPL18	Q9H0U6	180 aa	Known RBP	4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	4.83	□□□□□ -1.64
SPG11-223	ENST00000560858	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	DLL1	O00548	723 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	EPB42	P16452	691 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	ARID4A	P29374	1257 aa	Predicted RBP	4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	ATP1A2	P50993	1020 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	GRIK5	Q16478	980 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	INTS5	Q6P9B9	1019 aa	Known RBP	4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	POTEA	Q6S8J7	498 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	ALDH16A1	Q8IZ83	802 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	TPCN2	Q8NHX9	752 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	LPIN3	Q9BQK8	851 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	STOML1	Q9UBI4	398 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	RAX	Q9Y2V3	346 aa		4.82	□□□□□ -1.64
SPG11-223	ENST00000560858	PPP1R12B	O60237	982 aa	Predicted RBP	4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	DEAF1	O75398	565 aa	Predicted RBP	4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	ALX3	O95076	343 aa		4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	MAP3K6	O95382	1288 aa		4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	MED26	O95402	600 aa		4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	IGLV1-40	P01703	118 aa		4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	PERM1	Q5SV97	790 aa		4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	CCDC102B	Q68D86	513 aa		4.81	□□□□□ -1.64
SPG11-223	ENST00000560858	RBM19	Q9Y4C8	960 aa	Known RBP	4.81	□□□□□ -1.64
SPG11-223	ENST00000560858		F8W735	103 aa	Predicted RBP	4.8	□□□□□ -1.64
SPG11-223	ENST00000560858	GLB1	P16278	677 aa		4.8	□□□□□ -1.64
SPG11-223	ENST00000560858	IER5	Q5VY09	327 aa		4.8	□□□□□ -1.64
SPG11-223	ENST00000560858	DHX32	Q7L7V1	743 aa	Known RBP	4.8	□□□□□ -1.64
SPG11-223	ENST00000560858	TRPM4	Q8TD43	1214 aa		4.8	□□□□□ -1.64
SPG11-223	ENST00000560858	SRA1	Q9HD15	236 aa	Known RBP	4.8	□□□□□ -1.64
SPG11-223	ENST00000560858		M0R2N6	131 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	DHX15	O43143	795 aa	Known RBP	4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	WNT11	O96014	354 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	TGFB1	P01137	390 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	MAP4K3	Q8IVH8	894 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	DEPDC4	Q8N2C3	294 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	STAG2	Q8N3U4	1231 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	GAS2L2	Q8NHY3	880 aa		4.79	□□□□□ -1.64
SPG11-223	ENST00000560858	SMG9	Q9H0W8	520 aa	Known RBP	4.79	□□□□□ -1.64

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