RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 CLTCL1P53675 1640 aa9.12□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L15C9J2P7 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L10C9JJH3 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L13C9JLJ4 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L12C9JPN9 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L11C9JVI0 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L21D6R901 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L18D6R9N7 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L22D6RA61 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L17D6RBQ6 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L19D6RCP7 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L20D6RJB6 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 RASA1P20936 1047 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 USP17L24Q0WX57 530 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 IRF7Q92985 503 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 DNMT3LQ9UJW3 386 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 UGGT1Q9NYU2 1555 aa9.11□□□□□ -0.95
SCFD1-212ENST00000554486 PTPRMP28827 1452 aa9.1□□□□□ -0.95
SCFD1-212ENST00000554486 PIK3C2BO00750 1634 aa9.1□□□□□ -0.95
SCFD1-212ENST00000554486 FIGNL2A6NMB9 653 aa9.1□□□□□ -0.95
SCFD1-212ENST00000554486 ELOAQ14241 798 aaKnown RBP9.1□□□□□ -0.95
SCFD1-212ENST00000554486 INSM2Q96T92 566 aaPredicted RBP9.1□□□□□ -0.95
SCFD1-212ENST00000554486 DNAAF2Q9NVR5 837 aaKnown RBP9.1□□□□□ -0.95
SCFD1-212ENST00000554486 CCDC144AA2RUR9 1427 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 CARNS1A5YM72 827 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 TMEM229AB2RXF0 380 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 MYCP01106 439 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-212ENST00000554486 SCNN1DP51172 638 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 NEUROD1Q13562 356 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 LCE2AQ5TA79 106 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-212ENST00000554486 CYP2U1Q7Z449 544 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 TRIM50Q86XT4 487 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 SIX5Q8N196 739 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 LARGE2Q8N3Y3 721 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 RETREG2Q8NC44 543 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 STK32AQ8WU08 396 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 SIRT1Q96EB6 747 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 ZNF594Q96JF6 807 aaPredicted RBP9.09□□□□□ -0.95
SCFD1-212ENST00000554486 TNRQ92752 1358 aa9.09□□□□□ -0.95
SCFD1-212ENST00000554486 SETD1BQ9UPS6 1966 aaKnown RBP9.08□□□□□ -0.96
SCFD1-212ENST00000554486 H3BM21 787 aa9.08□□□□□ -0.96
SCFD1-212ENST00000554486 CTSOP43234 321 aaPredicted RBP9.08□□□□□ -0.96
SCFD1-212ENST00000554486 IDI1Q13907 227 aa9.08□□□□□ -0.96
SCFD1-212ENST00000554486 NOVA2Q9UNW9 492 aaKnown RBP9.08□□□□□ -0.96
SCFD1-212ENST00000554486 KIF1BO60333 1816 aa9.08□□□□□ -0.96
SCFD1-212ENST00000554486 TMEM88BA6NKF7 163 aa9.07□□□□□ -0.96
SCFD1-212ENST00000554486 DPYDQ12882 1025 aa9.07□□□□□ -0.96
SCFD1-212ENST00000554486 CCDC102BQ68D86 513 aa9.07□□□□□ -0.96
SCFD1-212ENST00000554486 ANKMY2Q8IV38 441 aa9.07□□□□□ -0.96
SCFD1-212ENST00000554486 ETNK1Q9HBU6 452 aa9.07□□□□□ -0.96
SCFD1-212ENST00000554486 MYO5BQ9ULV0 1848 aa9.07□□□□□ -0.96
SCFD1-212ENST00000554486 SPATA31E1Q6ZUB1 1445 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 VEGFBP49765 207 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 ATP1A2P50993 1020 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 TMEM164Q5U3C3 297 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 LARP1Q6PKG0 1096 aaKnown RBP9.06□□□□□ -0.96
SCFD1-212ENST00000554486 TPCN2Q8NHX9 752 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 NLRP3Q96P20 1036 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 SLC52A1Q9NWF4 448 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 SLAIN2Q9P270 581 aa9.06□□□□□ -0.96
SCFD1-212ENST00000554486 ADGRB3O60242 1522 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 TMEM131LA2VDJ0 1609 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 NEURL4Q96JN8 1562 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 SFI1A8K8P3 1242 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 PPFIA3O75145 1194 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 RNF144AP50876 292 aaPredicted RBP9.05□□□□□ -0.96
SCFD1-212ENST00000554486 PTSQ03393 145 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.05□□□□□ -0.96
SCFD1-212ENST00000554486 HRH3Q9Y5N1 445 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 MYO3AQ8NEV4 1616 aa9.05□□□□□ -0.96
SCFD1-212ENST00000554486 NLRP1Q9C000 1473 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 A0A1W2PRU2 124 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 MEN1O00255 615 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 WIPF1O43516 503 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 GNRH1P01148 92 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 IL2RAP01589 272 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 GPC1P35052 558 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 LYSMD3Q7Z3D4 306 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 RNF217Q8TC41 542 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 RAB6BQ9NRW1 208 aa9.04□□□□□ -0.96
SCFD1-212ENST00000554486 UBR1Q8IWV7 1749 aa9.03□□□□□ -0.96
SCFD1-212ENST00000554486 WASLO00401 505 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-212ENST00000554486 GDF10P55107 478 aa9.03□□□□□ -0.96
SCFD1-212ENST00000554486 INSM1Q01101 510 aaPredicted RBP9.03□□□□□ -0.96
SCFD1-212ENST00000554486 L3MBTL2Q969R5 705 aa9.03□□□□□ -0.96
SCFD1-212ENST00000554486 ARHGEF10LQ9HCE6 1279 aa9.03□□□□□ -0.96
SCFD1-212ENST00000554486 ZNF358Q9NW07 568 aa9.03□□□□□ -0.96
SCFD1-212ENST00000554486 KDM5AP29375 1690 aaKnown RBP9.03□□□□□ -0.96
SCFD1-212ENST00000554486 A2ML1A8K2U0 1454 aa9.02□□□□□ -0.96
SCFD1-212ENST00000554486 TONSLQ96HA7 1378 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 ZNF142P52746 1687 aaPredicted RBP9.02□□□□□ -0.97
SCFD1-212ENST00000554486 INHAP05111 366 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 PSME1Q06323 249 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 RGL3Q3MIN7 710 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 HOMEZQ8IX15 550 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 FAM200AQ8TCP9 573 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 XAGE2Q96GT9 111 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 IFT172Q9UG01 1749 aa9.02□□□□□ -0.97
SCFD1-212ENST00000554486 EPHA4P54764 986 aa9.01□□□□□ -0.97
SCFD1-212ENST00000554486 CLN3Q13286 438 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms