RNA–Protein interactions for RNA: ENST00000554074.1

SLIRP-203, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 3

Gene SLIRP, Length 445 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-203ENST00000554074 PRKRIP1Q9H875 184 aaPredicted RBP8.65□□□□□ -1.02
SLIRP-203ENST00000554074 TRIM35Q9UPQ4 493 aa8.65□□□□□ -1.02
SLIRP-203ENST00000554074 ADAMTSL1Q8N6G6 1762 aa8.65□□□□□ -1.02
SLIRP-203ENST00000554074 DDX60Q8IY21 1712 aaKnown RBP8.65□□□□□ -1.03
SLIRP-203ENST00000554074 TAF1P21675 1872 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 LRRC37AA6NMS7 1700 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 FAM177BA6PVY3 158 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 HSP90AB3PQ58FF7 597 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 SLC10A5Q5PT55 438 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 SUSD4Q5VX71 490 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 NUTM1Q86Y26 1132 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 CCDC146Q8IYE0 955 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 RPGRQ92834 1020 aaKnown RBP8.64□□□□□ -1.03
SLIRP-203ENST00000554074 CRAMP1Q96RY5 1269 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 DDX21Q9NR30 783 aaKnown RBP eCLIP8.64□□□□□ -1.03
SLIRP-203ENST00000554074 ADAMTS8Q9UP79 889 aa8.64□□□□□ -1.03
SLIRP-203ENST00000554074 IQCA1LA6NCM1 817 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 EIF2S2P20042 333 aaKnown RBP8.63□□□□□ -1.03
SLIRP-203ENST00000554074 GPTP24298 496 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 PROSER3Q2NL68 480 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 JMYQ8N9B5 988 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 KLRG1Q96E93 195 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 CFAP44Q96MT7 982 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 TRPM7Q96QT4 1865 aa8.63□□□□□ -1.03
SLIRP-203ENST00000554074 MYH3P11055 1940 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 FZD9O00144 591 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 DDNO94850 711 aaPredicted RBP8.62□□□□□ -1.03
SLIRP-203ENST00000554074 IARSP41252 1262 aaKnown RBP8.62□□□□□ -1.03
SLIRP-203ENST00000554074 TCIRG1Q13488 830 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 NEUROD2Q15784 382 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 COPS6Q7L5N1 327 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 SYNE4Q8N205 404 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 CNKSR2Q8WXI2 1034 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 RBM17Q96I25 401 aaKnown RBP8.62□□□□□ -1.03
SLIRP-203ENST00000554074 NLRP3Q96P20 1036 aa8.62□□□□□ -1.03
SLIRP-203ENST00000554074 UTP14AQ9BVJ6 771 aaKnown RBP8.62□□□□□ -1.03
SLIRP-203ENST00000554074 ZNF277Q9NRM2 450 aaPredicted RBP8.62□□□□□ -1.03
SLIRP-203ENST00000554074 ANXA1P04083 346 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 ZNF853P0CG23 659 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 CALD1Q05682 793 aaKnown RBP8.61□□□□□ -1.03
SLIRP-203ENST00000554074 CHADLQ6NUI6 762 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 OLFM4Q6UX06 510 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 NLRP10Q86W26 655 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 XAGE3Q8WTP9 111 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 VPS33BQ9H267 617 aa8.61□□□□□ -1.03
SLIRP-203ENST00000554074 DBF4Q9UBU7 674 aaPredicted RBP8.61□□□□□ -1.03
SLIRP-203ENST00000554074 SH3TC1Q8TE82 1336 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 ZNF541Q9H0D2 1346 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 COL4A5P29400 1685 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 PPEF1O14829 653 aaPredicted RBP8.6□□□□□ -1.03
SLIRP-203ENST00000554074 HDGFL1Q5TGJ6 251 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 LDHDQ86WU2 507 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 GPC2Q8N158 579 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 PLBD2Q8NHP8 589 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 JDP2Q8WYK2 163 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 TAF1DQ9H5J8 278 aaPredicted RBP8.6□□□□□ -1.03
SLIRP-203ENST00000554074 IFT57Q9NWB7 429 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 HYPKQ9NX55 129 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 CHPF2Q9P2E5 772 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 ATP6V0A2Q9Y487 856 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 LTBP1Q14766 1721 aa8.6□□□□□ -1.03
SLIRP-203ENST00000554074 ABCC4O15439 1325 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 BBOX1O75936 387 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 HOXD11P31277 338 aaPredicted RBP8.59□□□□□ -1.03
SLIRP-203ENST00000554074 GNAI1P63096 354 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 HTRA3P83110 453 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 AIMP1Q12904 312 aaKnown RBP8.59□□□□□ -1.03
SLIRP-203ENST00000554074 KRT24Q2M2I5 525 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 DUSP27Q5VZP5 1158 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 ANKRD13DQ6ZTN6 518 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 C3orf67Q6ZVT6 689 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 TMC4Q7Z404 712 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 PNMA8AQ86V59 439 aaPredicted RBP8.59□□□□□ -1.03
SLIRP-203ENST00000554074 NECTIN2Q92692 538 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 RTFDC1Q9BY42 306 aaPredicted RBP8.59□□□□□ -1.03
SLIRP-203ENST00000554074 CHMP4AQ9BY43 222 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 TMX4Q9H1E5 349 aaPredicted RBP8.59□□□□□ -1.03
SLIRP-203ENST00000554074 CREBZFQ9NS37 354 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 MBIPQ9NS73 344 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 HACL1Q9UJ83 578 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 LAS1LQ9Y4W2 734 aaKnown RBP8.59□□□□□ -1.03
SLIRP-203ENST00000554074 PSME4Q14997 1843 aa8.59□□□□□ -1.03
SLIRP-203ENST00000554074 PASKQ96RG2 1323 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 APAF1O14727 1248 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 EPHX2P34913 555 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 EIF6P56537 245 aaKnown RBP8.58□□□□□ -1.04
SLIRP-203ENST00000554074 TRIM28Q13263 835 aaKnown RBP8.58□□□□□ -1.04
SLIRP-203ENST00000554074 SP8Q8IXZ3 490 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 SUPT20HQ8NEM7 779 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 ISCA1Q9BUE6 129 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 TRMT112Q9UI30 125 aaKnown RBP8.58□□□□□ -1.04
SLIRP-203ENST00000554074 POLR2AP24928 1970 aaKnown RBP8.58□□□□□ -1.04
SLIRP-203ENST00000554074 PCNTO95613 3336 aa8.58□□□□□ -1.04
SLIRP-203ENST00000554074 DUOX1Q9NRD9 1551 aa8.57□□□□□ -1.04
SLIRP-203ENST00000554074 POTEIP0CG38 1075 aa8.57□□□□□ -1.04
SLIRP-203ENST00000554074 POTEJP0CG39 1038 aa8.57□□□□□ -1.04
SLIRP-203ENST00000554074 GRAPQ13588 217 aa8.57□□□□□ -1.04
SLIRP-203ENST00000554074 NCBP3Q53F19 620 aaKnown RBP8.57□□□□□ -1.04
SLIRP-203ENST00000554074 COL13A1Q5TAT6 717 aaPredicted RBP8.57□□□□□ -1.04
SLIRP-203ENST00000554074 DDX46Q7L014 1031 aaKnown RBP8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms