RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ALDH1B1P30837 517 aa17.44■□□□□ 0.38
VPS29-211ENST00000553128 EIF6P56537 245 aaKnown RBP17.44■□□□□ 0.38
VPS29-211ENST00000553128 PHACTR3Q96KR7 559 aa17.44■□□□□ 0.38
VPS29-211ENST00000553128 CC2D1BQ5T0F9 858 aaKnown RBP17.43■□□□□ 0.38
VPS29-211ENST00000553128 CRY2Q49AN0 593 aa17.42■□□□□ 0.38
VPS29-211ENST00000553128 NUTM1Q86Y26 1132 aa17.42■□□□□ 0.38
VPS29-211ENST00000553128 USP50Q70EL3 339 aaPredicted RBP17.41■□□□□ 0.38
VPS29-211ENST00000553128 TRPM7Q96QT4 1865 aa17.4■□□□□ 0.38
VPS29-211ENST00000553128 PER1O15534 1290 aaPredicted RBP17.4■□□□□ 0.38
VPS29-211ENST00000553128 SNRPA1P09661 255 aaKnown RBP17.4■□□□□ 0.38
VPS29-211ENST00000553128 MAP2K2P36507 400 aa17.4■□□□□ 0.38
VPS29-211ENST00000553128 SAPCD2Q86UD0 394 aa17.4■□□□□ 0.38
VPS29-211ENST00000553128 LARGE2Q8N3Y3 721 aa17.4■□□□□ 0.38
VPS29-211ENST00000553128 TCERG1O14776 1098 aaKnown RBP17.39■□□□□ 0.37
VPS29-211ENST00000553128 GTF2E1P29083 439 aaPredicted RBP17.39■□□□□ 0.37
VPS29-211ENST00000553128 CNGB1Q14028 1251 aaPredicted RBP17.39■□□□□ 0.37
VPS29-211ENST00000553128 CASP8AP2Q9UKL3 1982 aa17.39■□□□□ 0.37
VPS29-211ENST00000553128 CELF2O95319 508 aaKnown RBP17.38■□□□□ 0.37
VPS29-211ENST00000553128 DGKZQ13574 1117 aa17.38■□□□□ 0.37
VPS29-211ENST00000553128 MCM10Q7L590 875 aa17.38■□□□□ 0.37
VPS29-211ENST00000553128 ZIC5Q96T25 663 aa17.38■□□□□ 0.37
VPS29-211ENST00000553128 GLIS2Q9BZE0 524 aaPredicted RBP17.38■□□□□ 0.37
VPS29-211ENST00000553128 KIF7Q2M1P5 1343 aa17.38■□□□□ 0.37
VPS29-211ENST00000553128 PRKAR2BP31323 418 aa17.37■□□□□ 0.37
VPS29-211ENST00000553128 C3orf67Q6ZVT6 689 aa17.37■□□□□ 0.37
VPS29-211ENST00000553128 GPRC5DQ9NZD1 345 aa17.37■□□□□ 0.37
VPS29-211ENST00000553128 RGL2O15211 777 aa17.36■□□□□ 0.37
VPS29-211ENST00000553128 HOXA10P31260 410 aaPredicted RBP17.36■□□□□ 0.37
VPS29-211ENST00000553128 DCTN1Q14203 1278 aa17.36■□□□□ 0.37
VPS29-211ENST00000553128 CC2D2BQ6DHV5 1058 aa17.36■□□□□ 0.37
VPS29-211ENST00000553128 CIAPIN1Q6FI81 312 aa17.36■□□□□ 0.37
VPS29-211ENST00000553128 NGEFQ8N5V2 710 aa17.36■□□□□ 0.37
VPS29-211ENST00000553128 RSPH6AQ9H0K4 717 aa17.36■□□□□ 0.37
VPS29-211ENST00000553128 ADARB2Q9NS39 739 aaKnown RBP17.36■□□□□ 0.37
VPS29-211ENST00000553128 BRPF1P55201 1214 aaPredicted RBP17.35■□□□□ 0.37
VPS29-211ENST00000553128 AOC3Q16853 763 aa17.35■□□□□ 0.37
VPS29-211ENST00000553128 NIM1KQ8IY84 436 aa17.35■□□□□ 0.37
VPS29-211ENST00000553128 RPGRQ92834 1020 aaKnown RBP17.35■□□□□ 0.37
VPS29-211ENST00000553128 UBN2Q6ZU65 1347 aa17.35■□□□□ 0.37
VPS29-211ENST00000553128 PPEF1O14829 653 aaPredicted RBP17.34■□□□□ 0.37
VPS29-211ENST00000553128 PPIP5K2O43314 1243 aa17.34■□□□□ 0.37
VPS29-211ENST00000553128 CA12O43570 354 aa17.34■□□□□ 0.37
VPS29-211ENST00000553128 HIRAP54198 1017 aaPredicted RBP17.34■□□□□ 0.37
VPS29-211ENST00000553128 CXCL9Q07325 125 aa17.34■□□□□ 0.37
VPS29-211ENST00000553128 RIC1Q4ADV7 1423 aa17.34■□□□□ 0.37
VPS29-211ENST00000553128 DLK2Q6UY11 383 aa17.34■□□□□ 0.37
VPS29-211ENST00000553128 ZNF408Q9H9D4 720 aa17.34■□□□□ 0.37
VPS29-211ENST00000553128 NPC1L1Q9UHC9 1359 aa17.33■□□□□ 0.36
VPS29-211ENST00000553128 GPTP24298 496 aa17.33■□□□□ 0.36
VPS29-211ENST00000553128 GMPSP49915 693 aaPredicted RBP17.33■□□□□ 0.36
VPS29-211ENST00000553128 TTLL7Q6ZT98 887 aa17.33■□□□□ 0.36
VPS29-211ENST00000553128 NYXQ9GZU5 481 aa17.33■□□□□ 0.36
VPS29-211ENST00000553128 MIS18AQ9NYP9 233 aa17.33■□□□□ 0.36
VPS29-211ENST00000553128 SUSD4Q5VX71 490 aa17.32■□□□□ 0.36
VPS29-211ENST00000553128 HHIPL1Q96JK4 782 aa17.32■□□□□ 0.36
VPS29-211ENST00000553128 PGAP2Q9UHJ9 254 aa17.32■□□□□ 0.36
VPS29-211ENST00000553128 SHTN1A0MZ66 631 aa17.31■□□□□ 0.36
VPS29-211ENST00000553128 SOX10P56693 466 aa17.31■□□□□ 0.36
VPS29-211ENST00000553128 TRPM4Q8TD43 1214 aa17.31■□□□□ 0.36
VPS29-211ENST00000553128 CRAMP1Q96RY5 1269 aa17.31■□□□□ 0.36
VPS29-211ENST00000553128 MAP3K15Q6ZN16 1313 aa17.3■□□□□ 0.36
VPS29-211ENST00000553128 GRIPAP1Q4V328 841 aa17.3■□□□□ 0.36
VPS29-211ENST00000553128 RBM17Q96I25 401 aaKnown RBP17.3■□□□□ 0.36
VPS29-211ENST00000553128 NUP98P52948 1817 aa17.29■□□□□ 0.36
VPS29-211ENST00000553128 ERVV-1B6SEH8 477 aa17.29■□□□□ 0.36
VPS29-211ENST00000553128 NTSR2O95665 410 aa17.29■□□□□ 0.36
VPS29-211ENST00000553128 TRIM26Q12899 539 aaPredicted RBP17.29■□□□□ 0.36
VPS29-211ENST00000553128 RTF1Q92541 710 aaKnown RBP17.29■□□□□ 0.36
VPS29-211ENST00000553128 PCGF6Q9BYE7 350 aa17.29■□□□□ 0.36
VPS29-211ENST00000553128 ZBTB3Q9H5J0 574 aa17.29■□□□□ 0.36
VPS29-211ENST00000553128 ZNRF3Q9ULT6 936 aa17.29■□□□□ 0.36
VPS29-211ENST00000553128 CLSPNQ9HAW4 1339 aa17.28■□□□□ 0.36
VPS29-211ENST00000553128 RAD17O75943 681 aa17.28■□□□□ 0.36
VPS29-211ENST00000553128 RRP7AQ9Y3A4 280 aaKnown RBP17.28■□□□□ 0.36
VPS29-211ENST00000553128 PDE4DIPQ5VU43 2346 aa17.28■□□□□ 0.36
VPS29-211ENST00000553128 IBTKQ9P2D0 1353 aaPredicted RBP17.28■□□□□ 0.36
VPS29-211ENST00000553128 HUNKP57058 714 aa17.27■□□□□ 0.36
VPS29-211ENST00000553128 NOGQ13253 232 aa17.27■□□□□ 0.36
VPS29-211ENST00000553128 USP48Q86UV5 1035 aa17.27■□□□□ 0.36
VPS29-211ENST00000553128 ZNF34Q8IZ26 560 aa17.27■□□□□ 0.36
VPS29-211ENST00000553128 ATP6V0A2Q9Y487 856 aa17.27■□□□□ 0.36
VPS29-211ENST00000553128 LAMB4A4D0S4 1761 aa17.27■□□□□ 0.35
VPS29-211ENST00000553128 ABCC4O15439 1325 aa17.26■□□□□ 0.35
VPS29-211ENST00000553128 FAM155AB1AL88 458 aaPredicted RBP17.26■□□□□ 0.35
VPS29-211ENST00000553128 MYL6BP14649 208 aa17.26■□□□□ 0.35
VPS29-211ENST00000553128 CDC37L1Q7L3B6 337 aa17.26■□□□□ 0.35
VPS29-211ENST00000553128 RTFDC1Q9BY42 306 aaPredicted RBP17.26■□□□□ 0.35
VPS29-211ENST00000553128 YDJCA8MPS7 323 aa17.25■□□□□ 0.35
VPS29-211ENST00000553128 TAF7Q15545 349 aaPredicted RBP17.25■□□□□ 0.35
VPS29-211ENST00000553128 KIF6Q6ZMV9 814 aa17.25■□□□□ 0.35
VPS29-211ENST00000553128 ZC3H15Q8WU90 426 aaKnown RBP17.25■□□□□ 0.35
VPS29-211ENST00000553128 BCL2L13Q9BXK5 485 aa17.25■□□□□ 0.35
VPS29-211ENST00000553128 VPS33BQ9H267 617 aa17.24■□□□□ 0.35
VPS29-211ENST00000553128 CNOT7Q9UIV1 285 aaKnown RBP17.24■□□□□ 0.35
VPS29-211ENST00000553128 EGFRP00533 1210 aa17.23■□□□□ 0.35
VPS29-211ENST00000553128 U2AF1L5P0DN76 240 aaPredicted RBP17.23■□□□□ 0.35
VPS29-211ENST00000553128 U2AF1Q01081 240 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS29-211ENST00000553128 KIAA2012Q0VF49 1180 aa17.23■□□□□ 0.35
VPS29-211ENST00000553128 DPP8Q6V1X1 898 aaPredicted RBP17.23■□□□□ 0.35
VPS29-211ENST00000553128 NLRP3Q96P20 1036 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 93.5 ms