RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 TTLL5Q6EMB2 1281 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 UNC5CLQ8IV45 518 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 C19orf44Q9H6X5 657 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 SYT1P21579 422 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 UBE2HP62256 183 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 NACAP1Q9BZK3 213 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 AKAP2Q9Y2D5 859 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 CCDC129Q6ZRS4 1044 aa18.42■□□□□ 0.54
CUX1-211ENST00000546411 PCMTD1Q96MG8 357 aaPredicted RBP18.42■□□□□ 0.54
CUX1-211ENST00000546411 IQSEC3Q9UPP2 1182 aaPredicted RBP18.42■□□□□ 0.54
CUX1-211ENST00000546411 GOLGA8BA8MQT2 603 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 BIN1O00499 593 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 CREB3L3Q68CJ9 461 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 FAM177A1Q8N128 213 aaPredicted RBP18.41■□□□□ 0.54
CUX1-211ENST00000546411 ZNF213O14771 459 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 C8orf76Q96K31 380 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 TPM2P07951 284 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 ISM2Q6H9L7 571 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 TRIM22Q8IYM9 498 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 SUCLG2Q96I99 432 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 ZNF496Q96IT1 587 aaPredicted RBP18.41■□□□□ 0.54
CUX1-211ENST00000546411 SERPINC1P01008 464 aa18.41■□□□□ 0.54
CUX1-211ENST00000546411 MADDQ8WXG6 1647 aa18.4■□□□□ 0.54
CUX1-211ENST00000546411 E9PCH4 1651 aa18.4■□□□□ 0.54
CUX1-211ENST00000546411 F13A1P00488 732 aa18.4■□□□□ 0.54
CUX1-211ENST00000546411 PKNOX2Q96KN3 472 aa18.4■□□□□ 0.54
CUX1-211ENST00000546411 ZSCAN25Q6NSZ9 544 aa18.39■□□□□ 0.54
CUX1-211ENST00000546411 Q6ZUG5 572 aa18.39■□□□□ 0.54
CUX1-211ENST00000546411 MICU3Q86XE3 530 aa18.39■□□□□ 0.54
CUX1-211ENST00000546411 ANTXR1Q9H6X2 564 aa18.39■□□□□ 0.54
CUX1-211ENST00000546411 KIAA0232Q92628 1395 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 PRAMEF22A3QJZ6 481 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 SGSM2O43147 1006 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 TPM1P09493 284 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 XBP1P17861 261 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 HELBQ8NG08 1087 aaPredicted RBP18.39■□□□□ 0.53
CUX1-211ENST00000546411 UBAC1Q9BSL1 405 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 NAPBQ9H115 298 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 PROSER3Q2NL68 480 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 TSR1Q2NL82 804 aaKnown RBP18.39■□□□□ 0.53
CUX1-211ENST00000546411 DBNDD2Q9BQY9 259 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 RBSNQ9H1K0 784 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 USP16Q9Y5T5 823 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 SNX14Q9Y5W7 946 aa18.39■□□□□ 0.53
CUX1-211ENST00000546411 RNF17Q9BXT8 1623 aaKnown RBP18.39■□□□□ 0.53
CUX1-211ENST00000546411 CEP57L1Q8IYX8 460 aa18.38■□□□□ 0.53
CUX1-211ENST00000546411 TTC41PQ6P2S7 1318 aa18.38■□□□□ 0.53
CUX1-211ENST00000546411 NPHP3Q7Z494 1330 aa18.38■□□□□ 0.53
CUX1-211ENST00000546411 DACT1Q9NYF0 836 aa18.38■□□□□ 0.53
CUX1-211ENST00000546411 A1BGP04217 495 aa18.38■□□□□ 0.53
CUX1-211ENST00000546411 TTC12Q9H892 705 aaPredicted RBP18.38■□□□□ 0.53
CUX1-211ENST00000546411 IGHMBP2P38935 993 aaKnown RBP18.38■□□□□ 0.53
CUX1-211ENST00000546411 JMYQ8N9B5 988 aa18.38■□□□□ 0.53
CUX1-211ENST00000546411 FSIP1Q8NA03 581 aa18.37■□□□□ 0.53
CUX1-211ENST00000546411 ZNF594Q96JF6 807 aaPredicted RBP18.37■□□□□ 0.53
CUX1-211ENST00000546411 ANKRD18BA2A2Z9 1011 aa18.37■□□□□ 0.53
CUX1-211ENST00000546411 ZNF165P49910 485 aa18.37■□□□□ 0.53
CUX1-211ENST00000546411 CCDC171Q6TFL3 1326 aa18.37■□□□□ 0.53
CUX1-211ENST00000546411 FAM135BQ49AJ0 1406 aa18.37■□□□□ 0.53
CUX1-211ENST00000546411 GAS2L3Q86XJ1 694 aa18.37■□□□□ 0.53
CUX1-211ENST00000546411 ORC3Q9UBD5 711 aaPredicted RBP18.37■□□□□ 0.53
CUX1-211ENST00000546411 SLC4A8Q2Y0W8 1093 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 MCMDC2Q4G0Z9 681 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 GNL3LQ9NVN8 582 aaKnown RBP18.36■□□□□ 0.53
CUX1-211ENST00000546411 PDE4CQ08493 712 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 MEX3CQ5U5Q3 659 aaKnown RBP18.36■□□□□ 0.53
CUX1-211ENST00000546411 SHROOM2Q13796 1616 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 HECW2Q9P2P5 1572 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 SPHKAPQ2M3C7 1700 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 EXOC5O00471 708 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 FAM89AQ96GI7 184 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 BRMS1Q9HCU9 246 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 AATKQ6ZMQ8 1374 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 TSPOAP1O95153 1857 aa18.36■□□□□ 0.53
CUX1-211ENST00000546411 GADD45BO75293 160 aaPredicted RBP18.35■□□□□ 0.53
CUX1-211ENST00000546411 CLCN1P35523 988 aa18.35■□□□□ 0.53
CUX1-211ENST00000546411 HMGN5P82970 282 aaKnown RBP18.35■□□□□ 0.53
CUX1-211ENST00000546411 GIGYF1O75420 1035 aaPredicted RBP18.35■□□□□ 0.53
CUX1-211ENST00000546411 HMGB1P09429 215 aaKnown RBP18.35■□□□□ 0.53
CUX1-211ENST00000546411 MNS1Q8NEH6 495 aa18.35■□□□□ 0.53
CUX1-211ENST00000546411 ACSBG1Q96GR2 724 aa18.35■□□□□ 0.53
CUX1-211ENST00000546411 SSH3Q8TE77 659 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 SIRT1Q96EB6 747 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 DCAF5Q96JK2 942 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 APOBRQ0VD83 1088 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 LMBRD1Q9NUN5 540 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 PAG1Q9NWQ8 432 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 HMG20BQ9P0W2 317 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 ARHGEF10O15013 1369 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 KLF18A0A0U1RQI7 1052 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 INTS4Q96HW7 963 aaKnown RBP18.34■□□□□ 0.53
CUX1-211ENST00000546411 IFIT3O14879 490 aaKnown RBP18.34■□□□□ 0.53
CUX1-211ENST00000546411 ANKRD20A12PQ8NF67 263 aa18.34■□□□□ 0.53
CUX1-211ENST00000546411 ABCA6Q8N139 1617 aa18.33■□□□□ 0.53
CUX1-211ENST00000546411 RUFY3Q7L099 469 aa18.33■□□□□ 0.53
CUX1-211ENST00000546411 EAF2Q96CJ1 260 aaPredicted RBP18.33■□□□□ 0.52
CUX1-211ENST00000546411 TRMT1Q9NXH9 659 aaKnown RBP18.33■□□□□ 0.52
CUX1-211ENST00000546411 C16orf45Q96MC5 204 aaPredicted RBP18.33■□□□□ 0.52
CUX1-211ENST00000546411 CDKL5O76039 1030 aa18.32■□□□□ 0.52
CUX1-211ENST00000546411 ATP2B3Q16720 1220 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms