RNA–Protein interactions for RNA: ENST00000543185.5

HDAC4-215, Transcript of histone deacetylase 4, humanhuman

TSL 5 BASIC

Gene HDAC4, Length 8,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-215ENST00000543185 CABP2Q9NPB3 220 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 FERMT2Q96AC1 680 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 NAPBQ9H115 298 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 ATAD2BQ9ULI0 1458 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 CKAP2LQ8IYA6 745 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 LUC7L2Q9Y383 392 aaKnown RBP22.12■■□□□ 1.13
HDAC4-215ENST00000543185 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.12■■□□□ 1.134e-8■■■■■ 340.8
HDAC4-215ENST00000543185 SSX2IPQ9Y2D8 614 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 ZKSCAN5Q9Y2L8 839 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 ATP2A2P16615 1042 aaKnown RBP22.12■■□□□ 1.13
HDAC4-215ENST00000543185 FAM76AQ8TAV0 307 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 GOLGA8BA8MQT2 603 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 CUL5Q93034 780 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 NCAPD3P42695 1498 aa22.12■■□□□ 1.13
HDAC4-215ENST00000543185 BAG4O95429 457 aaKnown RBP22.11■■□□□ 1.13
HDAC4-215ENST00000543185 SKILP12757 684 aa22.11■■□□□ 1.13
HDAC4-215ENST00000543185 TATP17735 454 aaPredicted RBP22.11■■□□□ 1.13
HDAC4-215ENST00000543185 KIAA1524Q8TCG1 905 aa22.11■■□□□ 1.13
HDAC4-215ENST00000543185 NOP2P46087 812 aaKnown RBP22.11■■□□□ 1.13
HDAC4-215ENST00000543185 MIPOL1Q8TD10 442 aa22.11■■□□□ 1.13
HDAC4-215ENST00000543185 CFTRP13569 1480 aa22.11■■□□□ 1.13
HDAC4-215ENST00000543185 SLFN5Q08AF3 891 aa22.11■■□□□ 1.13
HDAC4-215ENST00000543185 MCM6Q14566 821 aa22.11■■□□□ 1.13
HDAC4-215ENST00000543185 IGHMBP2P38935 993 aaKnown RBP22.1■■□□□ 1.13
HDAC4-215ENST00000543185 PRPF4BQ13523 1007 aaKnown RBP22.1■■□□□ 1.13
HDAC4-215ENST00000543185 CACNA2D3Q8IZS8 1091 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 VAV2P52735 878 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 UBASH3AP57075 661 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 VCX3BQ9H321 246 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 COMMD10Q9Y6G5 202 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 MICALL1Q8N3F8 863 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 STMN2Q93045 179 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 CCDC14Q49A88 953 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 NSD2O96028 1365 aa22.1■■□□□ 1.13
HDAC4-215ENST00000543185 SARNPP82979 210 aaKnown RBP22.09■■□□□ 1.13
HDAC4-215ENST00000543185 MAP7D1Q3KQU3 841 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 SLF2Q8IX21 1173 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 CCDC114Q96M63 670 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 EVI5LQ96CN4 794 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 EPRSP07814 1512 aaKnown RBP22.09■■□□□ 1.13
HDAC4-215ENST00000543185 GBP1P32455 592 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 TTF1Q15361 905 aaPredicted RBP22.09■■□□□ 1.13
HDAC4-215ENST00000543185 ZBTB16Q05516 673 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 TBC1D32Q96NH3 1257 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 EXOC1Q9NV70 894 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 ARHGAP25P42331 645 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 SCLT1Q96NL6 688 aa22.09■■□□□ 1.13
HDAC4-215ENST00000543185 IBSPP21815 317 aaPredicted RBP22.08■■□□□ 1.13
HDAC4-215ENST00000543185 ATRIPQ8WXE1 791 aa22.08■■□□□ 1.13
HDAC4-215ENST00000543185 PRPF40BQ6NWY9 871 aaKnown RBP22.08■■□□□ 1.13
HDAC4-215ENST00000543185 TMEM57Q8N5G2 664 aa22.08■■□□□ 1.13
HDAC4-215ENST00000543185 TSNAXIP1Q2TAA8 658 aa22.08■■□□□ 1.12
HDAC4-215ENST00000543185 LMNTD2Q8IXW0 634 aa22.08■■□□□ 1.12
HDAC4-215ENST00000543185 BTBD11A6QL63 1104 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 CCDC40Q4G0X9 1142 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 CWC25Q9NXE8 425 aaPredicted RBP22.07■■□□□ 1.12
HDAC4-215ENST00000543185 CPLX4Q7Z7G2 160 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 FAM184BQ9ULE4 1060 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 TRERF1Q96PN7 1200 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 TRIM7Q9C029 511 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 MAP3K12Q12852 859 aa22.07■■□□□ 1.12
HDAC4-215ENST00000543185 NFE2L2Q16236 605 aa22.06■■□□□ 1.12
HDAC4-215ENST00000543185 FERMT3Q86UX7 667 aa22.06■■□□□ 1.12
HDAC4-215ENST00000543185 PPFIBP2Q8ND30 876 aa22.06■■□□□ 1.12
HDAC4-215ENST00000543185 AKR1B10O60218 316 aa22.06■■□□□ 1.12
HDAC4-215ENST00000543185 CABP4P57796 275 aa22.06■■□□□ 1.12
HDAC4-215ENST00000543185 ERMNQ8TAM6 284 aa22.06■■□□□ 1.12
HDAC4-215ENST00000543185 GABPB1Q06547 395 aaPredicted RBP22.06■■□□□ 1.12
HDAC4-215ENST00000543185 N4BP3O15049 544 aa22.05■■□□□ 1.12
HDAC4-215ENST00000543185 CIB2O75838 187 aa22.05■■□□□ 1.12
HDAC4-215ENST00000543185 CLUL1Q15846 466 aa22.05■■□□□ 1.12
HDAC4-215ENST00000543185 NSD3Q9BZ95 1437 aa22.05■■□□□ 1.12
HDAC4-215ENST00000543185 MTRF1LQ9UGC7 380 aaKnown RBP22.05■■□□□ 1.12
HDAC4-215ENST00000543185 ERCC6LQ2NKX8 1250 aa22.05■■□□□ 1.12
HDAC4-215ENST00000543185 LIG1P18858 919 aa22.05■■□□□ 1.12
HDAC4-215ENST00000543185 GJB2P29033 226 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 SYKP43405 635 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 DZIP1Q86YF9 867 aaKnown RBP22.04■■□□□ 1.12
HDAC4-215ENST00000543185 VCXQ9H320 206 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 SSFA2P28290 1259 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 CROCCP2Q86T23 111 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 PAIP2Q9BPZ3 127 aaKnown RBP22.04■■□□□ 1.12
HDAC4-215ENST00000543185 SDAD1Q9NVU7 687 aaKnown RBP eCLIP22.04■■□□□ 1.128e-6■■■□□ 14.7
HDAC4-215ENST00000543185 KIF5AQ12840 1032 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 ZNF652Q9Y2D9 606 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 NAA25Q14CX7 972 aa22.04■■□□□ 1.12
HDAC4-215ENST00000543185 SYT1P21579 422 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 SETD1BQ9UPS6 1966 aaKnown RBP22.03■■□□□ 1.12
HDAC4-215ENST00000543185 GNAT3A8MTJ3 354 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 IDH1O75874 414 aaKnown RBP22.03■■□□□ 1.12
HDAC4-215ENST00000543185 DNA2P51530 1060 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 TERF1P54274 439 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 DDX55Q8NHQ9 600 aaKnown RBP eCLIP22.03■■□□□ 1.12
HDAC4-215ENST00000543185 HDAC9Q9UKV0 1011 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 RUSC2Q8N2Y8 1516 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 CAVIN4Q5BKX8 364 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 RNF168Q8IYW5 571 aaPredicted RBP22.03■■□□□ 1.12
HDAC4-215ENST00000543185 GMNNO75496 209 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 UBA5Q9GZZ9 404 aa22.03■■□□□ 1.12
HDAC4-215ENST00000543185 SULT6B1Q6IMI4 303 aa22.02■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms