RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 TRIM28Q13263 835 aaKnown RBP14.68□□□□□ -0.06
YBX3-213ENST00000542641 CWF19L2Q2TBE0 894 aaKnown RBP14.68□□□□□ -0.06
YBX3-213ENST00000542641 PARP10Q53GL7 1025 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 NLRP10Q86W26 655 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 SRCIN1Q9C0H9 1055 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 SCN7AQ01118 1682 aa14.68□□□□□ -0.06
YBX3-213ENST00000542641 ABCC4O15439 1325 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 UBN2Q6ZU65 1347 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 FAM177BA6PVY3 158 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 NEURL1BA8MQ27 555 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 CCDC191Q8NCU4 936 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 CWC25Q9NXE8 425 aaPredicted RBP14.67□□□□□ -0.06
YBX3-213ENST00000542641 PARP3Q9Y6F1 533 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 BCORQ6W2J9 1755 aa14.67□□□□□ -0.06
YBX3-213ENST00000542641 CASZ1Q86V15 1759 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 ARFGEF2Q9Y6D5 1785 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 CARMIL3Q8ND23 1372 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 POLRMTO00411 1230 aaKnown RBP14.66□□□□□ -0.06
YBX3-213ENST00000542641 ALDH1L1O75891 902 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 SERPINB2P05120 415 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 POLD1P28340 1107 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 DDR1Q08345 913 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 SUSD4Q5VX71 490 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 INTS3Q68E01 1043 aaKnown RBP14.66□□□□□ -0.06
YBX3-213ENST00000542641 PPP1R42Q7Z4L9 355 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 NBPF5PQ86XG9 351 aaPredicted RBP14.66□□□□□ -0.06
YBX3-213ENST00000542641 TMEM57Q8N5G2 664 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 PANK1Q8TE04 598 aa14.66□□□□□ -0.06
YBX3-213ENST00000542641 NUP98P52948 1817 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 NPHP1O15259 732 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 RLBP1P12271 317 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 GTF2E1P29083 439 aaPredicted RBP14.65□□□□□ -0.06
YBX3-213ENST00000542641 GCKRQ14397 625 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 PDE3AQ14432 1141 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 TPTE2Q6XPS3 522 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 UTP14AQ9BVJ6 771 aaKnown RBP14.65□□□□□ -0.06
YBX3-213ENST00000542641 NYXQ9GZU5 481 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 SPON1Q9HCB6 807 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 TRMT112Q9UI30 125 aaKnown RBP14.65□□□□□ -0.06
YBX3-213ENST00000542641 RNF123Q5XPI4 1314 aa14.65□□□□□ -0.06
YBX3-213ENST00000542641 PXDNLA1KZ92 1463 aa14.64□□□□□ -0.07
YBX3-213ENST00000542641 C20orf194Q5TEA3 1177 aa14.64□□□□□ -0.07
YBX3-213ENST00000542641 C9orf78Q9NZ63 289 aaPredicted RBP14.64□□□□□ -0.07
YBX3-213ENST00000542641 RTL5Q5HYW3 569 aaPredicted RBP14.63□□□□□ -0.07
YBX3-213ENST00000542641 ITPRIPQ8IWB1 547 aa14.63□□□□□ -0.07
YBX3-213ENST00000542641 CNBD1Q8NA66 436 aa14.63□□□□□ -0.07
YBX3-213ENST00000542641 ZBTB38Q8NAP3 1195 aaPredicted RBP14.63□□□□□ -0.07
YBX3-213ENST00000542641 FAM89AQ96GI7 184 aa14.63□□□□□ -0.07
YBX3-213ENST00000542641 GRM8O00222 908 aa14.62□□□□□ -0.07
YBX3-213ENST00000542641 NTSR2O95665 410 aa14.62□□□□□ -0.07
YBX3-213ENST00000542641 PTGER2P43116 358 aa14.62□□□□□ -0.07
YBX3-213ENST00000542641 NUTM1Q86Y26 1132 aa14.62□□□□□ -0.07
YBX3-213ENST00000542641 JARID2Q92833 1246 aaPredicted RBP14.62□□□□□ -0.07
YBX3-213ENST00000542641 COG6Q9Y2V7 657 aa14.62□□□□□ -0.07
YBX3-213ENST00000542641 SH3TC1Q8TE82 1336 aa14.62□□□□□ -0.07
YBX3-213ENST00000542641 PCCAP05165 728 aaPredicted RBP14.61□□□□□ -0.07
YBX3-213ENST00000542641 ST5P78524 1137 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 ERFEQ4G0M1 354 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 PRR5LQ6MZQ0 368 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 UBE3BQ7Z3V4 1068 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 SYNE4Q8N205 404 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 CCDC24Q8N4L8 307 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 SGIP1Q9BQI5 828 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 USP44Q9H0E7 712 aa14.61□□□□□ -0.07
YBX3-213ENST00000542641 IBTKQ9P2D0 1353 aaPredicted RBP14.6□□□□□ -0.07
YBX3-213ENST00000542641 ANKRD36CQ5JPF3 1778 aa14.6□□□□□ -0.07
YBX3-213ENST00000542641 H7C1W4 665 aa14.6□□□□□ -0.07
YBX3-213ENST00000542641 MVPQ14764 893 aaKnown RBP14.6□□□□□ -0.07
YBX3-213ENST00000542641 IRS4O14654 1257 aaPredicted RBP14.59□□□□□ -0.07
YBX3-213ENST00000542641 NBPF7P0C2Y1 421 aaPredicted RBP14.59□□□□□ -0.07
YBX3-213ENST00000542641 DDX19BQ9UMR2 479 aa14.59□□□□□ -0.07
YBX3-213ENST00000542641 UTYO14607 1347 aa14.59□□□□□ -0.07
YBX3-213ENST00000542641 ZBTB7BO15156 539 aaPredicted RBP14.58□□□□□ -0.08
YBX3-213ENST00000542641 GNAI3P08754 354 aa14.58□□□□□ -0.08
YBX3-213ENST00000542641 UBTFL1P0CB47 393 aaPredicted RBP14.58□□□□□ -0.08
YBX3-213ENST00000542641 HCLS1P14317 486 aaPredicted RBP14.58□□□□□ -0.08
YBX3-213ENST00000542641 HSP90B1P14625 803 aaKnown RBP14.58□□□□□ -0.08
YBX3-213ENST00000542641 CASP7P55210 303 aa14.58□□□□□ -0.08
YBX3-213ENST00000542641 SLC10A5Q5PT55 438 aa14.58□□□□□ -0.08
YBX3-213ENST00000542641 MEIS3Q99687 375 aa14.58□□□□□ -0.08
YBX3-213ENST00000542641 BRIP1Q9BX63 1249 aa14.57□□□□□ -0.08
YBX3-213ENST00000542641 CHMP4BQ9H444 224 aaKnown RBP14.57□□□□□ -0.08
YBX3-213ENST00000542641 PPP1R1BQ9UD71 204 aaPredicted RBP14.57□□□□□ -0.08
YBX3-213ENST00000542641 HDAC5Q9UQL6 1122 aa14.57□□□□□ -0.08
YBX3-213ENST00000542641 CDHR2Q9BYE9 1310 aa14.57□□□□□ -0.08
YBX3-213ENST00000542641 COL24A1Q17RW2 1714 aa14.57□□□□□ -0.08
YBX3-213ENST00000542641 ABCC12Q96J65 1359 aa14.57□□□□□ -0.08
YBX3-213ENST00000542641 AFDNP55196 1824 aaKnown RBP14.57□□□□□ -0.08
YBX3-213ENST00000542641 PDE8AO60658 829 aa14.56□□□□□ -0.08
YBX3-213ENST00000542641 IRX6P78412 446 aaPredicted RBP14.56□□□□□ -0.08
YBX3-213ENST00000542641 KLHL34Q8N239 644 aa14.56□□□□□ -0.08
YBX3-213ENST00000542641 NLRP3Q96P20 1036 aa14.56□□□□□ -0.08
YBX3-213ENST00000542641 CRBNQ96SW2 442 aa14.56□□□□□ -0.08
YBX3-213ENST00000542641 GNAI2P04899 355 aa14.55□□□□□ -0.08
YBX3-213ENST00000542641 PDE6BP35913 854 aa14.55□□□□□ -0.08
YBX3-213ENST00000542641 SUCLG2Q96I99 432 aa14.55□□□□□ -0.08
YBX3-213ENST00000542641 SPDYE2BA6NHP3 402 aa14.54□□□□□ -0.08
YBX3-213ENST00000542641 SPDYE6P0CI01 402 aa14.54□□□□□ -0.08
YBX3-213ENST00000542641 SPDYE2Q495Y8 402 aa14.54□□□□□ -0.08
YBX3-213ENST00000542641 PLA2G12BQ9BX93 195 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms