RNA–Protein interactions for RNA: ENST00000540896.1

CLTCL1-206, Transcript of clathrin heavy chain like 1, humanhuman

TSL 4

Gene CLTCL1, Length 477 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-206ENST00000540896 BTBD11A6QL63 1104 aa8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 ELL2O00472 640 aaPredicted RBP8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 ZNF853P0CG23 659 aa8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 PRIM1P49642 420 aaKnown RBP8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 FAM196AQ6ZSG2 479 aa8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 NUDT18Q6ZVK8 323 aa8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 FAM198AQ9UFP1 575 aa8.55□□□□□ -1.04
CLTCL1-206ENST00000540896 CT47B1P0C2W7 299 aaPredicted RBP8.54□□□□□ -1.04
CLTCL1-206ENST00000540896 NFATC2IPQ8NCF5 419 aa8.54□□□□□ -1.04
CLTCL1-206ENST00000540896 BABAM1Q9NWV8 329 aa8.54□□□□□ -1.04
CLTCL1-206ENST00000540896 PKD1L3Q7Z443 1732 aa8.54□□□□□ -1.04
CLTCL1-206ENST00000540896 CANXP27824 592 aaKnown RBP8.53□□□□□ -1.04
CLTCL1-206ENST00000540896 SLF2Q8IX21 1173 aa8.53□□□□□ -1.04
CLTCL1-206ENST00000540896 GOLGA6L2Q8N9W4 650 aaPredicted RBP8.53□□□□□ -1.04
CLTCL1-206ENST00000540896 TTC13Q8NBP0 860 aa8.53□□□□□ -1.04
CLTCL1-206ENST00000540896 IL21Q9HBE4 155 aa8.53□□□□□ -1.04
CLTCL1-206ENST00000540896 SHANK3Q9BYB0 1731 aa8.53□□□□□ -1.04
CLTCL1-206ENST00000540896 CEMIPQ8WUJ3 1361 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 ERVV-2B6SEH9 535 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 TWISTNBQ3B726 338 aaPredicted RBP8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 TTC5Q8N0Z6 440 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 C8orf58Q8NAV2 365 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 SYTL4Q96C24 671 aaPredicted RBP8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 ACSBG1Q96GR2 724 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 SLC52A2Q9HAB3 445 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 CDHR5Q9HBB8 845 aa8.52□□□□□ -1.05
CLTCL1-206ENST00000540896 KCNQ2O43526 872 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 TRIM37O94972 964 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 RARSP54136 660 aaKnown RBP8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 KRT24Q2M2I5 525 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 TJAP1Q5JTD0 557 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 TSPYL6Q8N831 410 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 FRAT1Q92837 279 aaPredicted RBP8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 PRR14Q9BWN1 585 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 NPDC1Q9NQX5 325 aaPredicted RBP8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 TSHZ2Q9NRE2 1034 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 SMC4Q9NTJ3 1288 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 TMOD3Q9NYL9 352 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 BCL9O00512 1426 aa8.51□□□□□ -1.05
CLTCL1-206ENST00000540896 KDM6AO15550 1401 aaPredicted RBP8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 KCNQ3O43525 872 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 RNF40O75150 1001 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 VAMP4O75379 141 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 BCAR3O75815 825 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 RRP1P56182 461 aaKnown RBP8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 IRX6P78412 446 aaPredicted RBP8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 LAPTM4AQ15012 233 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 PADI6Q6TGC4 694 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 PTF1AQ7RTS3 328 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 CCDC125Q86Z20 511 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 ZNF428Q96B54 188 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 BCL2L13Q9BXK5 485 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 CHMP4AQ9BY43 222 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 GTF3C3Q9Y5Q9 886 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 KAT6BQ8WYB5 2073 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 DLG5Q8TDM6 1919 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 EP400Q96L91 3159 aa8.5□□□□□ -1.05
CLTCL1-206ENST00000540896 TCERG1O14776 1098 aaKnown RBP8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 PLIN1O60240 522 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 EIF4A1P60842 406 aaKnown RBP8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 SLC39A6Q13433 755 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 SF3B2Q13435 895 aaKnown RBP8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 ALDH1L2Q3SY69 923 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 ZNF790Q6PG37 636 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 SSH1Q8WYL5 1049 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 MTRQ99707 1265 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 STK31Q9BXU1 1019 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 SBF2Q86WG5 1849 aa8.49□□□□□ -1.05
CLTCL1-206ENST00000540896 IPO8O15397 1037 aaKnown RBP8.48□□□□□ -1.05
CLTCL1-206ENST00000540896 APBA3O96018 575 aa8.48□□□□□ -1.05
CLTCL1-206ENST00000540896 EIF2S2P20042 333 aaKnown RBP8.48□□□□□ -1.05
CLTCL1-206ENST00000540896 PIGBQ92521 554 aa8.48□□□□□ -1.05
CLTCL1-206ENST00000540896 FMNL2Q96PY5 1086 aa8.48□□□□□ -1.05
CLTCL1-206ENST00000540896 DOT1LQ8TEK3 1739 aa8.48□□□□□ -1.05
CLTCL1-206ENST00000540896 C3orf80F5H4A9 247 aa8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 PTCD1O75127 700 aaKnown RBP8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 SNRPA1P09661 255 aaKnown RBP8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 MS4A1P11836 297 aa8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 HDGFL1Q5TGJ6 251 aa8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 CCDC30Q5VVM6 783 aa8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 ZKSCAN2Q63HK3 967 aa8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 NOB1Q9ULX3 412 aaKnown RBP8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 SOS1Q07889 1333 aaPredicted RBP8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 RNF123Q5XPI4 1314 aa8.47□□□□□ -1.05
CLTCL1-206ENST00000540896 NHSQ6T4R5 1651 aa8.46□□□□□ -1.05
CLTCL1-206ENST00000540896 TOGARAM1Q9Y4F4 1720 aa8.46□□□□□ -1.05
CLTCL1-206ENST00000540896 SCN11AQ9UI33 1791 aa8.46□□□□□ -1.05
CLTCL1-206ENST00000540896 ITGB4P16144 1822 aa8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 GIGYF1O75420 1035 aaPredicted RBP8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 HOXB7P09629 217 aa8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 GGCXP38435 758 aa8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 SWT1Q5T5J6 900 aaKnown RBP8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 FTSJ3Q8IY81 847 aaKnown RBP8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 RBM46Q8TBY0 533 aaKnown RBP8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 KCNV2Q8TDN2 545 aa8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 ZNF496Q96IT1 587 aaPredicted RBP8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 KIF16BQ96L93 1317 aa8.46□□□□□ -1.06
CLTCL1-206ENST00000540896 PLSCR1O15162 318 aa8.45□□□□□ -1.06
CLTCL1-206ENST00000540896 BAG6P46379 1132 aa8.45□□□□□ -1.06
CLTCL1-206ENST00000540896 DEFB132Q7Z7B7 95 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms