RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 GIGYF2Q6Y7W6 1299 aaKnown RBP13.39□□□□□ -0.27
LEMD3-202ENST00000539442 CDAN1Q8IWY9 1227 aa13.39□□□□□ -0.27
LEMD3-202ENST00000539442 AK7Q96M32 723 aa13.39□□□□□ -0.27
LEMD3-202ENST00000539442 MEIS3Q99687 375 aa13.39□□□□□ -0.27
LEMD3-202ENST00000539442 METRNQ9UJH8 293 aa13.39□□□□□ -0.27
LEMD3-202ENST00000539442 HDAC5Q9UQL6 1122 aa13.39□□□□□ -0.27
LEMD3-202ENST00000539442 RTCBQ9Y3I0 505 aaKnown RBP13.39□□□□□ -0.27
LEMD3-202ENST00000539442 GNPATO15228 680 aa13.38□□□□□ -0.27
LEMD3-202ENST00000539442 TCIRG1Q13488 830 aa13.38□□□□□ -0.27
LEMD3-202ENST00000539442 B4GALNT3Q6L9W6 998 aa13.38□□□□□ -0.27
LEMD3-202ENST00000539442 USP44Q9H0E7 712 aa13.38□□□□□ -0.27
LEMD3-202ENST00000539442 UTYO14607 1347 aa13.38□□□□□ -0.27
LEMD3-202ENST00000539442 CAMTA2O94983 1202 aa13.37□□□□□ -0.27
LEMD3-202ENST00000539442 UBTFL1P0CB47 393 aaPredicted RBP13.37□□□□□ -0.27
LEMD3-202ENST00000539442 TRIM28Q13263 835 aaKnown RBP13.37□□□□□ -0.27
LEMD3-202ENST00000539442 SF3B2Q13435 895 aaKnown RBP13.37□□□□□ -0.27
LEMD3-202ENST00000539442 CWF19L2Q2TBE0 894 aaKnown RBP13.37□□□□□ -0.27
LEMD3-202ENST00000539442 PROM2Q8N271 834 aa13.37□□□□□ -0.27
LEMD3-202ENST00000539442 CCDC191Q8NCU4 936 aa13.37□□□□□ -0.27
LEMD3-202ENST00000539442 ISCA1Q9BUE6 129 aa13.37□□□□□ -0.27
LEMD3-202ENST00000539442 PCDHB15Q9Y5E8 787 aa13.37□□□□□ -0.27
LEMD3-202ENST00000539442 GRM8O00222 908 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 GNAI2P04899 355 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 GCKRQ14397 625 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 CLEC4GQ6UXB4 293 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 CCDC125Q86Z20 511 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 ARXQ96QS3 562 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 C9orf78Q9NZ63 289 aaPredicted RBP13.36□□□□□ -0.27
LEMD3-202ENST00000539442 TBC1D2BQ9UPU7 963 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 ZNF652Q9Y2D9 606 aa13.36□□□□□ -0.27
LEMD3-202ENST00000539442 EP400Q96L91 3159 aa13.35□□□□□ -0.27
LEMD3-202ENST00000539442 SSFA2P28290 1259 aa13.35□□□□□ -0.27
LEMD3-202ENST00000539442 BAG6P46379 1132 aa13.35□□□□□ -0.27
LEMD3-202ENST00000539442 HDAC1Q13547 482 aaPredicted RBP13.35□□□□□ -0.27
LEMD3-202ENST00000539442 HLFQ16534 295 aa13.35□□□□□ -0.27
LEMD3-202ENST00000539442 RPAP2Q8IXW5 612 aaPredicted RBP13.35□□□□□ -0.27
LEMD3-202ENST00000539442 SLC39A7Q92504 469 aa13.35□□□□□ -0.27
LEMD3-202ENST00000539442 RWDD1Q9H446 243 aaPredicted RBP13.35□□□□□ -0.27
LEMD3-202ENST00000539442 CWC25Q9NXE8 425 aaPredicted RBP13.35□□□□□ -0.27
LEMD3-202ENST00000539442 BCORQ6W2J9 1755 aa13.35□□□□□ -0.27
LEMD3-202ENST00000539442 SCN7AQ01118 1682 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 ATP5J2-PTCD1G3V325 749 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 C7P10643 843 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 TRAPPC3LQ5T215 181 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 CENPQQ7L2Z9 268 aaPredicted RBP13.34□□□□□ -0.27
LEMD3-202ENST00000539442 CAMKK2Q96RR4 588 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 NARFQ9UHQ1 456 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 KDM2BQ8NHM5 1336 aa13.34□□□□□ -0.27
LEMD3-202ENST00000539442 NBPF7P0C2Y1 421 aaPredicted RBP13.33□□□□□ -0.28
LEMD3-202ENST00000539442 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
LEMD3-202ENST00000539442 PARP10Q53GL7 1025 aa13.33□□□□□ -0.28
LEMD3-202ENST00000539442 CEP85Q6P2H3 762 aa13.33□□□□□ -0.28
LEMD3-202ENST00000539442 ZNF34Q8IZ26 560 aa13.33□□□□□ -0.28
LEMD3-202ENST00000539442 ANKRD44Q8N8A2 993 aa13.33□□□□□ -0.28
LEMD3-202ENST00000539442 ARHGEF1Q92888 912 aaKnown RBP13.33□□□□□ -0.28
LEMD3-202ENST00000539442 C1orf115Q9H7X2 142 aa13.33□□□□□ -0.28
LEMD3-202ENST00000539442 ANKRD36CQ5JPF3 1778 aa13.32□□□□□ -0.28
LEMD3-202ENST00000539442 UBR3Q6ZT12 1888 aa13.32□□□□□ -0.28
LEMD3-202ENST00000539442 H7C1W4 665 aa13.32□□□□□ -0.28
LEMD3-202ENST00000539442 ZPR1O75312 459 aa13.32□□□□□ -0.28
LEMD3-202ENST00000539442 PELP1Q8IZL8 1130 aaKnown RBP13.32□□□□□ -0.28
LEMD3-202ENST00000539442 FLAD1Q8NFF5 587 aa13.32□□□□□ -0.28
LEMD3-202ENST00000539442 LRRFIP2Q9Y608 721 aaKnown RBP13.32□□□□□ -0.28
LEMD3-202ENST00000539442 USP42Q9H9J4 1324 aaKnown RBP13.32□□□□□ -0.28
LEMD3-202ENST00000539442 AFDNP55196 1824 aaKnown RBP13.32□□□□□ -0.28
LEMD3-202ENST00000539442 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.31□□□□□ -0.28
LEMD3-202ENST00000539442 HMMRO75330 724 aa13.31□□□□□ -0.28
LEMD3-202ENST00000539442 PCCAP05165 728 aaPredicted RBP13.31□□□□□ -0.28
LEMD3-202ENST00000539442 RFC4P35249 363 aa13.31□□□□□ -0.28
LEMD3-202ENST00000539442 CASP7P55210 303 aa13.31□□□□□ -0.28
LEMD3-202ENST00000539442 EN1Q05925 392 aaPredicted RBP13.31□□□□□ -0.28
LEMD3-202ENST00000539442 MTX1Q13505 466 aa13.31□□□□□ -0.28
LEMD3-202ENST00000539442 EZH2Q15910 746 aaKnown RBP13.31□□□□□ -0.28
LEMD3-202ENST00000539442 NLRP10Q86W26 655 aa13.31□□□□□ -0.28
LEMD3-202ENST00000539442 NUP98P52948 1817 aa13.31□□□□□ -0.28
LEMD3-202ENST00000539442 PHF14O94880 888 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 IGHDP01880 384 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 ATP8B2P98198 1209 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 ZNF827Q17R98 1081 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 USPL1Q5W0Q7 1092 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 UBE3BQ7Z3V4 1068 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 AMIGO3Q86WK7 504 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 SIRT2Q8IXJ6 389 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 ZBTB38Q8NAP3 1195 aaPredicted RBP13.3□□□□□ -0.28
LEMD3-202ENST00000539442 SUCLG2Q96I99 432 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 UBN2Q6ZU65 1347 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 CDHR2Q9BYE9 1310 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 C4AP0C0L4 1744 aa13.3□□□□□ -0.28
LEMD3-202ENST00000539442 GPTP24298 496 aa13.29□□□□□ -0.28
LEMD3-202ENST00000539442 PPP1R42Q7Z4L9 355 aa13.29□□□□□ -0.28
LEMD3-202ENST00000539442 GCC1Q96CN9 775 aa13.29□□□□□ -0.28
LEMD3-202ENST00000539442 BCL2L12Q9HB09 334 aa13.29□□□□□ -0.28
LEMD3-202ENST00000539442 TFCP2L1Q9NZI6 479 aa13.29□□□□□ -0.28
LEMD3-202ENST00000539442 NIP7Q9Y221 180 aaKnown RBP eCLIP13.29□□□□□ -0.28
LEMD3-202ENST00000539442 RABL6Q3YEC7 729 aaPredicted RBP13.28□□□□□ -0.28
LEMD3-202ENST00000539442 SMC5Q8IY18 1101 aa13.28□□□□□ -0.28
LEMD3-202ENST00000539442 PLA2G12BQ9BX93 195 aa13.28□□□□□ -0.28
LEMD3-202ENST00000539442 SRP68Q9UHB9 627 aaKnown RBP13.28□□□□□ -0.28
LEMD3-202ENST00000539442 POTEJP0CG39 1038 aa13.27□□□□□ -0.29
LEMD3-202ENST00000539442 HSP90B1P14625 803 aaKnown RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms