RNA–Protein interactions for RNA: ENST00000535094.6

MCF2L-232, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2L, Length 3,752 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-232ENST00000535094 NEXNQ0ZGT2 675 aa18.75■□□□□ 0.59
MCF2L-232ENST00000535094 MYO3AQ8NEV4 1616 aa18.75■□□□□ 0.59
MCF2L-232ENST00000535094 CCAR2Q8N163 923 aaKnown RBP18.75■□□□□ 0.59
MCF2L-232ENST00000535094 MAP2P11137 1827 aaKnown RBP18.74■□□□□ 0.59
MCF2L-232ENST00000535094 AATKQ6ZMQ8 1374 aa18.74■□□□□ 0.59
MCF2L-232ENST00000535094 CDK12Q9NYV4 1490 aaPredicted RBP18.74■□□□□ 0.59
MCF2L-232ENST00000535094 GNL2Q13823 731 aaKnown RBP18.74■□□□□ 0.59
MCF2L-232ENST00000535094 CEP135Q66GS9 1140 aa18.74■□□□□ 0.59
MCF2L-232ENST00000535094 CCDC129Q6ZRS4 1044 aa18.74■□□□□ 0.59
MCF2L-232ENST00000535094 CHST3Q7LGC8 479 aa18.74■□□□□ 0.59
MCF2L-232ENST00000535094 LRRC59Q96AG4 307 aaKnown RBP18.73■□□□□ 0.59
MCF2L-232ENST00000535094 ANKRD1Q15327 319 aa18.73■□□□□ 0.59
MCF2L-232ENST00000535094 ERC1Q8IUD2 1116 aa18.73■□□□□ 0.59
MCF2L-232ENST00000535094 PPLO60437 1756 aa18.73■□□□□ 0.59
MCF2L-232ENST00000535094 SKILP12757 684 aa18.73■□□□□ 0.59
MCF2L-232ENST00000535094 ARID5BQ14865 1188 aa18.73■□□□□ 0.59
MCF2L-232ENST00000535094 DDX19AQ9NUU7 478 aaKnown RBP18.73■□□□□ 0.59
MCF2L-232ENST00000535094 MRVI1Q9Y6F6 885 aa18.73■□□□□ 0.59
MCF2L-232ENST00000535094 A0A0G2JS52 829 aa18.72■□□□□ 0.59
MCF2L-232ENST00000535094 TTC14Q96N46 770 aa18.72■□□□□ 0.59
MCF2L-232ENST00000535094 HDAC5Q9UQL6 1122 aa18.72■□□□□ 0.59
MCF2L-232ENST00000535094 SLC27A2O14975 620 aa18.72■□□□□ 0.59
MCF2L-232ENST00000535094 PSME1Q06323 249 aa18.72■□□□□ 0.59
MCF2L-232ENST00000535094 ARHGEF28Q8N1W1 1705 aaKnown RBP18.72■□□□□ 0.59
MCF2L-232ENST00000535094 A0A0D9SFI3 127 aa18.71■□□□□ 0.59
MCF2L-232ENST00000535094 DDX46Q7L014 1031 aaKnown RBP18.71■□□□□ 0.59
MCF2L-232ENST00000535094 LEO1Q8WVC0 666 aaPredicted RBP18.71■□□□□ 0.59
MCF2L-232ENST00000535094 PRDM4Q9UKN5 801 aa18.71■□□□□ 0.59
MCF2L-232ENST00000535094 MLH3Q9UHC1 1453 aa18.71■□□□□ 0.59
MCF2L-232ENST00000535094 CPSF1Q10570 1443 aaKnown RBP18.71■□□□□ 0.59
MCF2L-232ENST00000535094 DDX58O95786 925 aaKnown RBP18.71■□□□□ 0.59
MCF2L-232ENST00000535094 CCAR1Q8IX12 1150 aaKnown RBP18.71■□□□□ 0.59
MCF2L-232ENST00000535094 FTOQ9C0B1 505 aaKnown RBP eCLIP18.71■□□□□ 0.59
MCF2L-232ENST00000535094 ARAP3Q8WWN8 1544 aa18.71■□□□□ 0.59
MCF2L-232ENST00000535094 FLT4P35916 1363 aa18.71■□□□□ 0.59
MCF2L-232ENST00000535094 CSB-PGBD3P0DP91 1061 aa18.71■□□□□ 0.59
MCF2L-232ENST00000535094 ATP7BP35670 1465 aa18.71■□□□□ 0.58
MCF2L-232ENST00000535094 CPS1P31327 1500 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 ZNF75DP51815 510 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 TLR7Q9NYK1 1049 aaKnown RBP18.7■□□□□ 0.58
MCF2L-232ENST00000535094 TMX1Q9H3N1 280 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 NPHP3Q7Z494 1330 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 HIP1O00291 1037 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 DMTNQ08495 405 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 ZSCAN25Q6NSZ9 544 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 Q6ZUG5 572 aa18.7■□□□□ 0.58
MCF2L-232ENST00000535094 LMTK2Q8IWU2 1503 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 FSIP1Q8NA03 581 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 CACTINQ8WUQ7 758 aaKnown RBP18.69■□□□□ 0.58
MCF2L-232ENST00000535094 EAF2Q96CJ1 260 aaPredicted RBP18.69■□□□□ 0.58
MCF2L-232ENST00000535094 DBF4Q9UBU7 674 aaPredicted RBP18.69■□□□□ 0.58
MCF2L-232ENST00000535094 CFAP45Q9UL16 551 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 TCHHQ07283 1943 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 CHMP4AQ9BY43 222 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 ZSWIM6Q9HCJ5 1215 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 TAF6LQ9Y6J9 622 aa18.69■□□□□ 0.58
MCF2L-232ENST00000535094 SSH2Q76I76 1423 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 POLR3DP05423 398 aaPredicted RBP18.68■□□□□ 0.58
MCF2L-232ENST00000535094 HOXC9P31274 260 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 SLC39A6Q13433 755 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 BICC1Q9H694 974 aaKnown RBP18.68■□□□□ 0.58
MCF2L-232ENST00000535094 PRAMEF22A3QJZ6 481 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 COL9A3Q14050 684 aaPredicted RBP18.68■□□□□ 0.58
MCF2L-232ENST00000535094 PROSER3Q2NL68 480 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 NEK1Q96PY6 1258 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 STK38Q15208 465 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 AOPEPQ8N6M6 819 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 USP32Q8NFA0 1604 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 ALKQ9UM73 1620 aa18.68■□□□□ 0.58
MCF2L-232ENST00000535094 ZSCAN20P17040 1043 aaPredicted RBP18.67■□□□□ 0.58
MCF2L-232ENST00000535094 SEC62Q99442 399 aaKnown RBP18.67■□□□□ 0.58
MCF2L-232ENST00000535094 NCOA5Q9HCD5 579 aaKnown RBP18.67■□□□□ 0.58
MCF2L-232ENST00000535094 HSP90AA4PQ58FG1 418 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 TMEM87AQ8NBN3 555 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 MYD88Q99836 296 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 SALL3Q9BXA9 1300 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 CCDC69A6NI79 296 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 ATP5J2-PTCD1G3V325 749 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 CPLX1O14810 134 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 PTCD1O75127 700 aaKnown RBP18.67■□□□□ 0.58
MCF2L-232ENST00000535094 MAP3K5Q99683 1374 aa18.67■□□□□ 0.58
MCF2L-232ENST00000535094 TTC41PQ6P2S7 1318 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 ESCO1Q5FWF5 840 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 BEND3Q5T5X7 828 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 CEP57L1Q8IYX8 460 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 AOX1Q06278 1338 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 SMTNL1A8MU46 457 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 CHGBP05060 677 aa18.66■□□□□ 0.58
MCF2L-232ENST00000535094 CCDC85AQ96PX6 553 aaPredicted RBP18.66■□□□□ 0.58
MCF2L-232ENST00000535094 CRB1P82279 1406 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 TPM4P67936 248 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 WASHC4Q2M389 1173 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 PLEKHO1Q53GL0 409 aaPredicted RBP18.65■□□□□ 0.58
MCF2L-232ENST00000535094 OTUD7BQ6GQQ9 843 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 ZNF589Q86UQ0 364 aaPredicted RBP18.65■□□□□ 0.58
MCF2L-232ENST00000535094 SPTLC3Q9NUV7 552 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 ABCA9Q8IUA7 1624 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 APOBRQ0VD83 1088 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 KIF18AQ8NI77 898 aa18.65■□□□□ 0.58
MCF2L-232ENST00000535094 RPS6KB1P23443 525 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms