RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 FSIP1Q8NA03 581 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 SNX21Q969T3 373 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.74■□□□□ 0.592e-7■■■■■ 65
HMGXB3-202ENST00000503427 ZSCAN23Q3MJ62 389 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 GRM8O00222 908 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 KIF5CO60282 957 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 VAMP4O75379 141 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 GUCY1B3Q02153 619 aa18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 SMARCC1Q92922 1105 aaPredicted RBP18.74■□□□□ 0.59
HMGXB3-202ENST00000503427 MAP3K19Q56UN5 1328 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 IL2RBP14784 551 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 ATP8B2P98198 1209 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 STX1AQ16623 288 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 TMX3Q96JJ7 454 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 GOLIM4O00461 696 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 SDSP20132 328 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 CGNQ9P2M7 1197 aaKnown RBP18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 UQCRFS1P1P0C7P4 283 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 HOXC9P31274 260 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 CTCFLQ8NI51 663 aaPredicted RBP18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 URI1O94763 535 aaPredicted RBP18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 LRSAM1Q6UWE0 723 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 TAF4BQ92750 862 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 SLC12A7Q9Y666 1083 aa18.73■□□□□ 0.59
HMGXB3-202ENST00000503427 LINS1Q8NG48 757 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 TFIP11Q9UBB9 837 aaKnown RBP18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 GOLGA8BA8MQT2 603 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 ANAPC15P60006 121 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 DDX46Q7L014 1031 aaKnown RBP18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 LRRC59Q96AG4 307 aaKnown RBP18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 TMEM132AQ24JP5 1023 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 LARP6Q9BRS8 491 aaKnown RBP18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 ADGBQ8N7X0 1667 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 LDHCP07864 332 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 SLC39A6Q13433 755 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 TAF3Q5VWG9 929 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 DCAF5Q96JK2 942 aa18.72■□□□□ 0.59
HMGXB3-202ENST00000503427 CASQ1P31415 396 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 ZNF165P49910 485 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 FAM193AP78312 1265 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 PIBF1Q8WXW3 757 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 RBM27Q9P2N5 1060 aaKnown RBP18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 CCDC152Q4G0S7 254 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 CNNM3Q8NE01 707 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 SPA17Q15506 151 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 NCKAP5LQ9HCH0 1330 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 KLHL10Q6JEL2 608 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 PHACTR3Q96KR7 559 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 NEK1Q96PY6 1258 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 CRACR2AQ9BSW2 395 aa18.71■□□□□ 0.59
HMGXB3-202ENST00000503427 CCT2P78371 535 aaKnown RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 SEC63Q9UGP8 760 aaKnown RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 ZSCAN22P10073 491 aaPredicted RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 CRACR2BQ8N4Y2 399 aaPredicted RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 CENPHQ9H3R5 247 aa18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 MAGI3Q5TCQ9 1506 aa18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 LMTK3Q96Q04 1460 aa18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 GOLGA6L7A0A1B0GV03 622 aa18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 SSRP1Q08945 709 aaKnown RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 ZNF444Q8N0Y2 327 aaPredicted RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 C16orf45Q96MC5 204 aaPredicted RBP18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 KIF4BQ2VIQ3 1234 aa18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 BABAM1Q9NWV8 329 aa18.7■□□□□ 0.58
HMGXB3-202ENST00000503427 GCC2Q8IWJ2 1684 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 GOLGA8AA7E2F4 631 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 PDE1AP54750 535 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 FKBP15Q5T1M5 1219 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 ZSCAN16Q9H4T2 348 aaPredicted RBP18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 CFAP74Q9C0B2 1584 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 ZFYP08048 801 aaPredicted RBP18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 SBNO1A3KN83 1393 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 DDB1Q16531 1140 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 MAP9Q49MG5 647 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 RANBP6O60518 1105 aaKnown RBP18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 RFC4P35249 363 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 TSHZ3Q63HK5 1081 aa18.69■□□□□ 0.58
HMGXB3-202ENST00000503427 NEFHP12036 1026 aa18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 MCM3P25205 808 aa18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 SPTY2D1Q68D10 685 aaPredicted RBP18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 PRIMPOLQ96LW4 560 aa18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 IFIT3O14879 490 aaKnown RBP18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 IL15P40933 162 aaPredicted RBP18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 USP8P40818 1118 aa18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 CBX1P83916 185 aa18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.68■□□□□ 0.58
HMGXB3-202ENST00000503427 ERICH4A6NGS2 130 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 CABLES1Q8TDN4 633 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 CLCN1P35523 988 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 ESYT1Q9BSJ8 1104 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 USP16Q9Y5T5 823 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 MPHOSPH10O00566 681 aaKnown RBP18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 DYNC1I1O14576 645 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 XRCC6P12956 609 aaKnown RBP eCLIP18.67■□□□□ 0.588e-6■■□□□ 12.6
HMGXB3-202ENST00000503427 NFATC2IPQ8NCF5 419 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 SNRKQ9NRH2 765 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 TRMT1Q9NXH9 659 aaKnown RBP18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 ABCA8O94911 1581 aa18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 SEPT11Q9NVA2 429 aaKnown RBP18.67■□□□□ 0.58
HMGXB3-202ENST00000503427 TSPYL6Q8N831 410 aa18.66■□□□□ 0.58
HMGXB3-202ENST00000503427 MYO5CQ9NQX4 1742 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms