RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 LMOD1P29536 600 aaPredicted RBP22.2■■□□□ 1.14
VIM-208ENST00000497849 U2SURPO15042 1029 aaKnown RBP22.19■■□□□ 1.14
VIM-208ENST00000497849 HLFQ16534 295 aa22.19■■□□□ 1.14
VIM-208ENST00000497849 CRY2Q49AN0 593 aa22.19■■□□□ 1.14
VIM-208ENST00000497849 MAP2K2P36507 400 aa22.18■■□□□ 1.14
VIM-208ENST00000497849 USP50Q70EL3 339 aaPredicted RBP22.18■■□□□ 1.14
VIM-208ENST00000497849 PHACTR3Q96KR7 559 aa22.18■■□□□ 1.14
VIM-208ENST00000497849 MCOLN1Q9GZU1 580 aa22.18■■□□□ 1.14
VIM-208ENST00000497849 ABCC12Q96J65 1359 aa22.17■■□□□ 1.14
VIM-208ENST00000497849 PER1O15534 1290 aaPredicted RBP22.17■■□□□ 1.14
VIM-208ENST00000497849 SNRPA1P09661 255 aaKnown RBP22.17■■□□□ 1.14
VIM-208ENST00000497849 CC2D1BQ5T0F9 858 aaKnown RBP22.17■■□□□ 1.14
VIM-208ENST00000497849 SLC51AQ86UW1 340 aa22.17■■□□□ 1.14
VIM-208ENST00000497849 CC2D2BQ6DHV5 1058 aa22.16■■□□□ 1.14
VIM-208ENST00000497849 GTF2E1P29083 439 aaPredicted RBP22.15■■□□□ 1.14
VIM-208ENST00000497849 SAPCD2Q86UD0 394 aa22.15■■□□□ 1.14
VIM-208ENST00000497849 PDE4DIPQ5VU43 2346 aa22.15■■□□□ 1.14
VIM-208ENST00000497849 NUTM1Q86Y26 1132 aa22.14■■□□□ 1.13
VIM-208ENST00000497849 LARGE2Q8N3Y3 721 aa22.14■■□□□ 1.13
VIM-208ENST00000497849 CFAP44Q96MT7 982 aa22.14■■□□□ 1.13
VIM-208ENST00000497849 NUP98P52948 1817 aa22.13■■□□□ 1.13
VIM-208ENST00000497849 CA12O43570 354 aa22.12■■□□□ 1.13
VIM-208ENST00000497849 HOXA10P31260 410 aaPredicted RBP22.12■■□□□ 1.13
VIM-208ENST00000497849 KIF7Q2M1P5 1343 aa22.11■■□□□ 1.13
VIM-208ENST00000497849 CLSPNQ9HAW4 1339 aa22.11■■□□□ 1.13
VIM-208ENST00000497849 PRKAR2BP31323 418 aa22.11■■□□□ 1.13
VIM-208ENST00000497849 CELF2O95319 508 aaKnown RBP22.1■■□□□ 1.13
VIM-208ENST00000497849 BRPF1P55201 1214 aaPredicted RBP22.1■■□□□ 1.13
VIM-208ENST00000497849 RIC1Q4ADV7 1423 aa22.1■■□□□ 1.13
VIM-208ENST00000497849 GRIPAP1Q4V328 841 aa22.1■■□□□ 1.13
VIM-208ENST00000497849 HHIPL1Q96JK4 782 aa22.1■■□□□ 1.13
VIM-208ENST00000497849 RSPH6AQ9H0K4 717 aa22.1■■□□□ 1.13
VIM-208ENST00000497849 ADARB2Q9NS39 739 aaKnown RBP22.1■■□□□ 1.13
VIM-208ENST00000497849 GPRC5DQ9NZD1 345 aa22.1■■□□□ 1.13
VIM-208ENST00000497849 DGKZQ13574 1117 aa22.09■■□□□ 1.13
VIM-208ENST00000497849 MCM10Q7L590 875 aa22.09■■□□□ 1.13
VIM-208ENST00000497849 NIM1KQ8IY84 436 aa22.09■■□□□ 1.13
VIM-208ENST00000497849 RPGRQ92834 1020 aaKnown RBP22.09■■□□□ 1.13
VIM-208ENST00000497849 NYXQ9GZU5 481 aa22.09■■□□□ 1.13
VIM-208ENST00000497849 LAMB4A4D0S4 1761 aa22.09■■□□□ 1.13
VIM-208ENST00000497849 GLIS2Q9BZE0 524 aaPredicted RBP22.08■■□□□ 1.13
VIM-208ENST00000497849 TCERG1O14776 1098 aaKnown RBP22.07■■□□□ 1.12
VIM-208ENST00000497849 CIAPIN1Q6FI81 312 aa22.07■■□□□ 1.12
VIM-208ENST00000497849 CRAMP1Q96RY5 1269 aa22.07■■□□□ 1.12
VIM-208ENST00000497849 PGAP2Q9UHJ9 254 aa22.07■■□□□ 1.12
VIM-208ENST00000497849 PPEF1O14829 653 aaPredicted RBP22.06■■□□□ 1.12
VIM-208ENST00000497849 PPIP5K2O43314 1243 aa22.06■■□□□ 1.12
VIM-208ENST00000497849 CXCL9Q07325 125 aa22.06■■□□□ 1.12
VIM-208ENST00000497849 ZIC5Q96T25 663 aa22.06■■□□□ 1.12
VIM-208ENST00000497849 NPC1L1Q9UHC9 1359 aa22.06■■□□□ 1.12
VIM-208ENST00000497849 UBN2Q6ZU65 1347 aa22.06■■□□□ 1.12
VIM-208ENST00000497849 ERVV-1B6SEH8 477 aa22.05■■□□□ 1.12
VIM-208ENST00000497849 DCTN1Q14203 1278 aa22.05■■□□□ 1.12
VIM-208ENST00000497849 AOC3Q16853 763 aa22.05■■□□□ 1.12
VIM-208ENST00000497849 C3orf67Q6ZVT6 689 aa22.05■■□□□ 1.12
VIM-208ENST00000497849 IBTKQ9P2D0 1353 aaPredicted RBP22.04■■□□□ 1.12
VIM-208ENST00000497849 NGEFQ8N5V2 710 aa22.04■■□□□ 1.12
VIM-208ENST00000497849 RTF1Q92541 710 aaKnown RBP22.04■■□□□ 1.12
VIM-208ENST00000497849 RBM17Q96I25 401 aaKnown RBP22.04■■□□□ 1.12
VIM-208ENST00000497849 MAP3K15Q6ZN16 1313 aa22.04■■□□□ 1.12
VIM-208ENST00000497849 GPTP24298 496 aa22.03■■□□□ 1.12
VIM-208ENST00000497849 GMPSP49915 693 aaPredicted RBP22.03■■□□□ 1.12
VIM-208ENST00000497849 HIRAP54198 1017 aaPredicted RBP22.03■■□□□ 1.12
VIM-208ENST00000497849 CNGB1Q14028 1251 aaPredicted RBP22.03■■□□□ 1.12
VIM-208ENST00000497849 SUSD4Q5VX71 490 aa22.03■■□□□ 1.12
VIM-208ENST00000497849 TTLL7Q6ZT98 887 aa22.02■■□□□ 1.12
VIM-208ENST00000497849 VPS33BQ9H267 617 aa22.02■■□□□ 1.12
VIM-208ENST00000497849 ZNF408Q9H9D4 720 aa22.02■■□□□ 1.12
VIM-208ENST00000497849 ZNRF3Q9ULT6 936 aa22.02■■□□□ 1.12
VIM-208ENST00000497849 MIS18AQ9NYP9 233 aa22.01■■□□□ 1.11
VIM-208ENST00000497849 NTSR2O95665 410 aa22■■□□□ 1.11
VIM-208ENST00000497849 NOGQ13253 232 aa22■■□□□ 1.11
VIM-208ENST00000497849 ZC3H15Q8WU90 426 aaKnown RBP22■■□□□ 1.11
VIM-208ENST00000497849 ATP6V0A2Q9Y487 856 aa22■■□□□ 1.11
VIM-208ENST00000497849 TAF7Q15545 349 aaPredicted RBP21.99■■□□□ 1.11
VIM-208ENST00000497849 CDC37L1Q7L3B6 337 aa21.99■■□□□ 1.11
VIM-208ENST00000497849 ZNF34Q8IZ26 560 aa21.99■■□□□ 1.11
VIM-208ENST00000497849 TRPM4Q8TD43 1214 aa21.99■■□□□ 1.11
VIM-208ENST00000497849 RTFDC1Q9BY42 306 aaPredicted RBP21.99■■□□□ 1.11
VIM-208ENST00000497849 KDM3BQ7LBC6 1761 aa21.98■■□□□ 1.11
VIM-208ENST00000497849 ZBTB3Q9H5J0 574 aa21.98■■□□□ 1.11
VIM-208ENST00000497849 CDHR2Q9BYE9 1310 aa21.98■■□□□ 1.11
VIM-208ENST00000497849 SHTN1A0MZ66 631 aa21.97■■□□□ 1.11
VIM-208ENST00000497849 HTATSF1O43719 755 aaKnown RBP21.97■■□□□ 1.11
VIM-208ENST00000497849 DLK2Q6UY11 383 aa21.97■■□□□ 1.11
VIM-208ENST00000497849 KIF6Q6ZMV9 814 aa21.97■■□□□ 1.11
VIM-208ENST00000497849 RRP7AQ9Y3A4 280 aaKnown RBP21.97■■□□□ 1.11
VIM-208ENST00000497849 SOX10P56693 466 aa21.96■■□□□ 1.11
VIM-208ENST00000497849 HUNKP57058 714 aa21.96■■□□□ 1.11
VIM-208ENST00000497849 ABCC4O15439 1325 aa21.96■■□□□ 1.11
VIM-208ENST00000497849 FAM155AB1AL88 458 aaPredicted RBP21.95■■□□□ 1.1
VIM-208ENST00000497849 RAD17O75943 681 aa21.95■■□□□ 1.1
VIM-208ENST00000497849 SUPT20HQ8NEM7 779 aa21.95■■□□□ 1.1
VIM-208ENST00000497849 NLRP3Q96P20 1036 aa21.95■■□□□ 1.1
VIM-208ENST00000497849 BCL2L13Q9BXK5 485 aa21.95■■□□□ 1.1
VIM-208ENST00000497849 LAMB2P55268 1798 aa21.94■■□□□ 1.1
VIM-208ENST00000497849 POLR2AP24928 1970 aaKnown RBP21.94■■□□□ 1.1
VIM-208ENST00000497849 U2AF1L5P0DN76 240 aaPredicted RBP21.94■■□□□ 1.1
VIM-208ENST00000497849 MYL6BP14649 208 aa21.94■■□□□ 1.1
VIM-208ENST00000497849 U2AF1Q01081 240 aaKnown RBP eCLIP21.94■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms