RNA–Protein interactions for RNA: ENST00000479712.1

UPF3A-205, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-205ENST00000479712 TSEN34Q9BSV6 310 aaKnown RBP8.62□□□□□ -1.03
UPF3A-205ENST00000479712 RBCK1Q9BYM8 510 aa8.62□□□□□ -1.03
UPF3A-205ENST00000479712 BRD2P25440 801 aaKnown RBP8.61□□□□□ -1.03
UPF3A-205ENST00000479712 DGKZQ13574 1117 aa8.61□□□□□ -1.03
UPF3A-205ENST00000479712 PKDCCQ504Y2 493 aa8.61□□□□□ -1.03
UPF3A-205ENST00000479712 PHACTR1Q9C0D0 580 aa8.61□□□□□ -1.03
UPF3A-205ENST00000479712 CCDC88BA6NC98 1476 aa8.61□□□□□ -1.03
UPF3A-205ENST00000479712 FZD6O60353 706 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 UPP2O95045 317 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 PLA2G4AP47712 749 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 C11orf91Q3C1V1 193 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 ZNF326Q5BKZ1 582 aaKnown RBP8.6□□□□□ -1.03
UPF3A-205ENST00000479712 TMC7Q7Z402 723 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 TMC1Q8TDI8 760 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 MRRFQ96E11 262 aaKnown RBP8.6□□□□□ -1.03
UPF3A-205ENST00000479712 INSM2Q96T92 566 aaPredicted RBP8.6□□□□□ -1.03
UPF3A-205ENST00000479712 GRIP2Q9C0E4 1043 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 CCDC87Q9NVE4 849 aa8.6□□□□□ -1.03
UPF3A-205ENST00000479712 CUX1P39880 1505 aa8.59□□□□□ -1.03
UPF3A-205ENST00000479712 CAPN5O15484 640 aaPredicted RBP8.59□□□□□ -1.03
UPF3A-205ENST00000479712 RNF144AP50876 292 aaPredicted RBP8.59□□□□□ -1.03
UPF3A-205ENST00000479712 COL19A1Q14993 1142 aa8.59□□□□□ -1.03
UPF3A-205ENST00000479712 FBXO33Q7Z6M2 555 aa8.59□□□□□ -1.03
UPF3A-205ENST00000479712 LINC00528Q8N1L1 170 aa8.59□□□□□ -1.03
UPF3A-205ENST00000479712 POLMQ9NP87 494 aaPredicted RBP8.59□□□□□ -1.03
UPF3A-205ENST00000479712 KLK14Q9P0G3 267 aa8.59□□□□□ -1.03
UPF3A-205ENST00000479712 FHAD1B1AJZ9 1412 aa8.59□□□□□ -1.03
UPF3A-205ENST00000479712 ZBTB39O15060 712 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 SPINT1O43278 529 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 TXLNAP40222 546 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 MLECQ14165 292 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 C4orf17Q53FE4 359 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 FAM26DQ5JW98 314 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 LCE2AQ5TA79 106 aaPredicted RBP8.58□□□□□ -1.04
UPF3A-205ENST00000479712 C1orf53Q5VUE5 145 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 ATCAYQ86WG3 371 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 ETFBKMTQ8IXQ9 262 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 CITED4Q96RK1 184 aa8.58□□□□□ -1.04
UPF3A-205ENST00000479712 PTPRGP23470 1445 aa8.57□□□□□ -1.04
UPF3A-205ENST00000479712 CD109Q6YHK3 1445 aa8.57□□□□□ -1.04
UPF3A-205ENST00000479712 CEBPAP49715 358 aaPredicted RBP8.57□□□□□ -1.04
UPF3A-205ENST00000479712 EAPPQ56P03 285 aaPredicted RBP8.57□□□□□ -1.04
UPF3A-205ENST00000479712 IFT43Q96FT9 208 aa8.57□□□□□ -1.04
UPF3A-205ENST00000479712 MAGI3Q5TCQ9 1506 aa8.56□□□□□ -1.04
UPF3A-205ENST00000479712 RAPGEF3O95398 923 aa8.56□□□□□ -1.04
UPF3A-205ENST00000479712 CTSOP43234 321 aaPredicted RBP8.56□□□□□ -1.04
UPF3A-205ENST00000479712 NBPF1Q3BBV0 1214 aa8.56□□□□□ -1.04
UPF3A-205ENST00000479712 TREML4Q6UXN2 200 aa8.56□□□□□ -1.04
UPF3A-205ENST00000479712 DMRTB1Q96MA1 342 aa8.56□□□□□ -1.04
UPF3A-205ENST00000479712 KIAA1522Q9P206 1035 aaPredicted RBP8.56□□□□□ -1.04
UPF3A-205ENST00000479712 FER1L4A9Z1Z3 1794 aa8.56□□□□□ -1.04
UPF3A-205ENST00000479712 TREHO43280 583 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 P4HBP07237 508 aaKnown RBP8.55□□□□□ -1.04
UPF3A-205ENST00000479712 BMP2P12643 396 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 ZAP70P43403 619 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 PHKA2P46019 1235 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 TAGLNQ01995 201 aaKnown RBP8.55□□□□□ -1.04
UPF3A-205ENST00000479712 PDE3BQ13370 1112 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 RHPN1Q8TCX5 695 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 AIDAQ96BJ3 306 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 POLIQ9UNA4 740 aa8.55□□□□□ -1.04
UPF3A-205ENST00000479712 UHRF1BP1Q6BDS2 1440 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 ABCA10Q8WWZ4 1543 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 TTC37Q6PGP7 1564 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 SPATA31C2B4DYI2 1134 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 DNM1Q05193 864 aaKnown RBP8.54□□□□□ -1.04
UPF3A-205ENST00000479712 C6orf118Q5T5N4 469 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 EDEM1Q92611 657 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 FAM129BQ96TA1 746 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 BCL11AQ9H165 835 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 ZDHHC3Q9NYG2 299 aa8.54□□□□□ -1.04
UPF3A-205ENST00000479712 TATP17735 454 aaPredicted RBP8.53□□□□□ -1.04
UPF3A-205ENST00000479712 MZF1P28698 734 aaPredicted RBP8.53□□□□□ -1.04
UPF3A-205ENST00000479712 FMR1Q06787 632 aaKnown RBP eCLIP8.53□□□□□ -1.04
UPF3A-205ENST00000479712 HIF1AQ16665 826 aa8.53□□□□□ -1.04
UPF3A-205ENST00000479712 TREML1Q86YW5 311 aa8.53□□□□□ -1.04
UPF3A-205ENST00000479712 ZCCHC11Q5TAX3 1644 aaKnown RBP8.53□□□□□ -1.04
UPF3A-205ENST00000479712 SIGLEC1Q9BZZ2 1709 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 GPR182O15218 404 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 PDGFAP04085 211 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 USP5P45974 858 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 PLCB3Q01970 1234 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 POU4F2Q12837 409 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 MRPL14Q6P1L8 145 aaKnown RBP8.52□□□□□ -1.05
UPF3A-205ENST00000479712 NBPF10Q6P3W6 841 aaKnown RBP8.52□□□□□ -1.05
UPF3A-205ENST00000479712 PRICKLE2Q7Z3G6 844 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 GJD3Q8N144 294 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 RNF217Q8TC41 542 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 ARAP3Q8WWN8 1544 aa8.52□□□□□ -1.05
UPF3A-205ENST00000479712 FAM187AA6NFU0 413 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 TGFBR3LH3BV60 316 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 TOM1O60784 492 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 IGHA2P01877 340 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 PCSK2P16519 638 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 MAPK8P45983 427 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 EHHADHQ08426 723 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 DSC3Q14574 896 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 LYSMD3Q7Z3D4 306 aa8.51□□□□□ -1.05
UPF3A-205ENST00000479712 ALKBH8Q96BT7 664 aaKnown RBP8.51□□□□□ -1.05
UPF3A-205ENST00000479712 BCS1LQ9Y276 419 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 88.6 ms