RNA–Protein interactions for RNA: ENST00000445902.2

VPS52-212, Transcript of VPS52, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS52, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-212ENST00000445902 SCAND2PQ9GZW5 306 aaPredicted RBP16.46■□□□□ 0.23
VPS52-212ENST00000445902 XRN1Q8IZH2 1706 aaKnown RBP16.46■□□□□ 0.23
VPS52-212ENST00000445902 CCDC30Q5VVM6 783 aa16.46■□□□□ 0.23
VPS52-212ENST00000445902 TXNDC2Q86VQ3 553 aa16.46■□□□□ 0.23
VPS52-212ENST00000445902 NOL10Q9BSC4 688 aaKnown RBP16.46■□□□□ 0.23
VPS52-212ENST00000445902 TAF6LQ9Y6J9 622 aa16.46■□□□□ 0.23
VPS52-212ENST00000445902 MAP3K19Q56UN5 1328 aa16.45■□□□□ 0.22
VPS52-212ENST00000445902 SLU7O95391 586 aaKnown RBP16.45■□□□□ 0.22
VPS52-212ENST00000445902 RBM8AQ9Y5S9 174 aaKnown RBP16.45■□□□□ 0.22
VPS52-212ENST00000445902 NBPF7P0C2Y1 421 aaPredicted RBP16.45■□□□□ 0.22
VPS52-212ENST00000445902 KIF1BPQ96EK5 621 aa16.45■□□□□ 0.22
VPS52-212ENST00000445902 ZKSCAN1P17029 563 aaPredicted RBP16.44■□□□□ 0.22
VPS52-212ENST00000445902 CCZ1BP86790 482 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 CCZ1P86791 482 aaPredicted RBP16.44■□□□□ 0.22
VPS52-212ENST00000445902 PPP6R1Q9UPN7 881 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 GORABQ5T7V8 394 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 CCAR2Q8N163 923 aaKnown RBP16.44■□□□□ 0.22
VPS52-212ENST00000445902 BECN2A8MW95 431 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 IQCB1Q15051 598 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 CREB3L3Q68CJ9 461 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 RBM43Q6ZSC3 357 aaKnown RBP16.44■□□□□ 0.22
VPS52-212ENST00000445902 FAM227BQ96M60 508 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 CALCOCO1Q9P1Z2 691 aa16.44■□□□□ 0.22
VPS52-212ENST00000445902 JAK2O60674 1132 aa16.43■□□□□ 0.22
VPS52-212ENST00000445902 FAM53CQ9NYF3 392 aa16.43■□□□□ 0.22
VPS52-212ENST00000445902 HNRNPH2P55795 449 aaKnown RBP16.43■□□□□ 0.22
VPS52-212ENST00000445902 KLHL34Q8N239 644 aa16.43■□□□□ 0.22
VPS52-212ENST00000445902 IPO4Q8TEX9 1081 aaKnown RBP16.43■□□□□ 0.22
VPS52-212ENST00000445902 RUFY2Q8WXA3 655 aa16.43■□□□□ 0.22
VPS52-212ENST00000445902 POLR3GO15318 223 aaPredicted RBP16.42■□□□□ 0.22
VPS52-212ENST00000445902 PDCP20941 246 aa16.42■□□□□ 0.22
VPS52-212ENST00000445902 NECTIN1Q15223 517 aa16.42■□□□□ 0.22
VPS52-212ENST00000445902 CHMP4AQ9BY43 222 aa16.42■□□□□ 0.22
VPS52-212ENST00000445902 FTOQ9C0B1 505 aaKnown RBP eCLIP16.42■□□□□ 0.22
VPS52-212ENST00000445902 MLH3Q9UHC1 1453 aa16.42■□□□□ 0.22
VPS52-212ENST00000445902 TRIM34Q9BYJ4 488 aa16.42■□□□□ 0.22
VPS52-212ENST00000445902 CDC25BP30305 580 aa16.41■□□□□ 0.22
VPS52-212ENST00000445902 SYT10Q6XYQ8 523 aa16.41■□□□□ 0.22
VPS52-212ENST00000445902 CCDC61Q9Y6R9 512 aa16.41■□□□□ 0.22
VPS52-212ENST00000445902 GLRX3O76003 335 aaKnown RBP16.41■□□□□ 0.22
VPS52-212ENST00000445902 CLCN6P51797 869 aa16.41■□□□□ 0.22
VPS52-212ENST00000445902 FAM208AQ9UK61 1670 aaKnown RBP16.41■□□□□ 0.22
VPS52-212ENST00000445902 EIF2S2P20042 333 aaKnown RBP16.41■□□□□ 0.22
VPS52-212ENST00000445902 SNW1Q13573 536 aaKnown RBP16.41■□□□□ 0.22
VPS52-212ENST00000445902 POLA2Q14181 598 aa16.41■□□□□ 0.22
VPS52-212ENST00000445902 TM6SF1Q9BZW5 370 aa16.41■□□□□ 0.22
VPS52-212ENST00000445902 NRKQ7Z2Y5 1582 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 PPFIA3O75145 1194 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 NEK11Q8NG66 645 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 MRFAP1L1Q96HT8 127 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 FHOD1Q9Y613 1164 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 BMS1Q14692 1282 aaKnown RBP16.4■□□□□ 0.22
VPS52-212ENST00000445902 BLOC1S2Q6QNY1 142 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 ARHGEF10O15013 1369 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 DLC1Q96QB1 1528 aa16.4■□□□□ 0.22
VPS52-212ENST00000445902 SLC27A2O14975 620 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 CYP2C19P33261 490 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 NMIQ13287 307 aaPredicted RBP16.39■□□□□ 0.21
VPS52-212ENST00000445902 TTC21BQ7Z4L5 1316 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 AOPEPQ8N6M6 819 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 BRF1Q92994 677 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 PA2G4Q9UQ80 394 aaKnown RBP16.39■□□□□ 0.21
VPS52-212ENST00000445902 ARHGAP29Q52LW3 1261 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 DNAJC2Q99543 621 aaKnown RBP16.39■□□□□ 0.21
VPS52-212ENST00000445902 PEAK1Q9H792 1746 aa16.39■□□□□ 0.21
VPS52-212ENST00000445902 NEMFO60524 1076 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 SETD1AO15047 1707 aaKnown RBP16.38■□□□□ 0.21
VPS52-212ENST00000445902 MON2Q7Z3U7 1717 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 H3BQV1 296 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 ANXA1P04083 346 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 PNMA6AP0CW24 399 aaPredicted RBP16.38■□□□□ 0.21
VPS52-212ENST00000445902 TOB2Q14106 344 aaPredicted RBP16.38■□□□□ 0.21
VPS52-212ENST00000445902 STX1AQ16623 288 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 SLFNL1Q499Z3 407 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 IFFO2Q5TF58 517 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 HDGFL1Q5TGJ6 251 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 SARM1Q6SZW1 724 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 DHX40Q8IX18 779 aaKnown RBP16.38■□□□□ 0.21
VPS52-212ENST00000445902 IFIT2P09913 472 aaKnown RBP16.38■□□□□ 0.21
VPS52-212ENST00000445902 H2AFXP16104 143 aaPredicted RBP16.38■□□□□ 0.21
VPS52-212ENST00000445902 GOLPH3LQ9H4A5 285 aa16.38■□□□□ 0.21
VPS52-212ENST00000445902 TULP2O00295 520 aa16.37■□□□□ 0.21
VPS52-212ENST00000445902 PLA2G4AP47712 749 aa16.37■□□□□ 0.21
VPS52-212ENST00000445902 E4F1Q66K89 784 aaPredicted RBP16.37■□□□□ 0.21
VPS52-212ENST00000445902 CCAR1Q8IX12 1150 aaKnown RBP16.37■□□□□ 0.21
VPS52-212ENST00000445902 CLASRPQ8N2M8 674 aaKnown RBP16.37■□□□□ 0.21
VPS52-212ENST00000445902 C3P01024 1663 aa16.37■□□□□ 0.21
VPS52-212ENST00000445902 PRR36Q9H6K5 1346 aa16.37■□□□□ 0.21
VPS52-212ENST00000445902 TAF7Q15545 349 aaPredicted RBP16.37■□□□□ 0.21
VPS52-212ENST00000445902 ECHDC1Q9NTX5 307 aa16.37■□□□□ 0.21
VPS52-212ENST00000445902 ADCY9O60503 1353 aa16.37■□□□□ 0.21
VPS52-212ENST00000445902 A0A0D9SFI3 127 aa16.36■□□□□ 0.21
VPS52-212ENST00000445902 SEC31AO94979 1220 aaKnown RBP16.36■□□□□ 0.21
VPS52-212ENST00000445902 PPP1R13BQ96KQ4 1090 aa16.36■□□□□ 0.21
VPS52-212ENST00000445902 ITSN1Q15811 1721 aa16.36■□□□□ 0.21
VPS52-212ENST00000445902 MAP3K5Q99683 1374 aa16.36■□□□□ 0.21
VPS52-212ENST00000445902 ZBTB9Q96C00 473 aa16.36■□□□□ 0.21
VPS52-212ENST00000445902 HSP90B1P14625 803 aaKnown RBP16.35■□□□□ 0.21
VPS52-212ENST00000445902 RPS6KB1P23443 525 aa16.35■□□□□ 0.21
VPS52-212ENST00000445902 PSMA5P28066 241 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms