RNA–Protein interactions for RNA: ENST00000445265.6

TCOF1-206, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,825 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-206ENST00000445265 HSP90B2PQ58FF3 399 aa19.44■□□□□ 0.7
TCOF1-206ENST00000445265 CCDC85AQ96PX6 553 aaPredicted RBP19.44■□□□□ 0.7
TCOF1-206ENST00000445265 GUCY1B3Q02153 619 aa19.44■□□□□ 0.7
TCOF1-206ENST00000445265 NMIQ13287 307 aaPredicted RBP19.44■□□□□ 0.7
TCOF1-206ENST00000445265 BRF1Q92994 677 aa19.44■□□□□ 0.7
TCOF1-206ENST00000445265 NOL7Q9UMY1 257 aaKnown RBP19.44■□□□□ 0.7
TCOF1-206ENST00000445265 XAGE3Q8WTP9 111 aa19.44■□□□□ 0.7
TCOF1-206ENST00000445265 PNMA6EA0A0J9YXQ4 647 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 TNNT1P13805 278 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 PPFIBP1Q86W92 1011 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 KIF18AQ8NI77 898 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 SPHKAPQ2M3C7 1700 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 CCDC66A2RUB6 948 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 IFIT5Q13325 482 aaKnown RBP19.43■□□□□ 0.7
TCOF1-206ENST00000445265 TCEANC2Q96MN5 208 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 ATP5J2-PTCD1G3V325 749 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 ZNF213O14771 459 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 SGSM2O43147 1006 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 TDO2P48775 406 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 CREB3L3Q68CJ9 461 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 CWC25Q9NXE8 425 aaPredicted RBP19.43■□□□□ 0.7
TCOF1-206ENST00000445265 NPHP3Q7Z494 1330 aa19.43■□□□□ 0.7
TCOF1-206ENST00000445265 FSD2A1L4K1 749 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 COPS6Q7L5N1 327 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 IP6K1Q92551 441 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 GSDMDP57764 484 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 CFAP100Q494V2 611 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 UBAC1Q9BSL1 405 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 CHD1O14646 1710 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 RUFY3Q7L099 469 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 CCAR1Q8IX12 1150 aaKnown RBP19.42■□□□□ 0.7
TCOF1-206ENST00000445265 NUP133Q8WUM0 1156 aa19.42■□□□□ 0.7
TCOF1-206ENST00000445265 DACT1Q9NYF0 836 aa19.41■□□□□ 0.7
TCOF1-206ENST00000445265 GOLGA8BA8MQT2 603 aa19.41■□□□□ 0.7
TCOF1-206ENST00000445265 ZNF853P0CG23 659 aa19.41■□□□□ 0.7
TCOF1-206ENST00000445265 MCMDC2Q4G0Z9 681 aa19.41■□□□□ 0.7
TCOF1-206ENST00000445265 PKNOX2Q96KN3 472 aa19.41■□□□□ 0.7
TCOF1-206ENST00000445265 CCDC171Q6TFL3 1326 aa19.41■□□□□ 0.7
TCOF1-206ENST00000445265 C16orf45Q96MC5 204 aaPredicted RBP19.41■□□□□ 0.7
TCOF1-206ENST00000445265 DDX46Q7L014 1031 aaKnown RBP19.41■□□□□ 0.7
TCOF1-206ENST00000445265 CWF19L2Q2TBE0 894 aaKnown RBP19.4■□□□□ 0.7
TCOF1-206ENST00000445265 PRKCSHP14314 528 aaPredicted RBP19.4■□□□□ 0.7
TCOF1-206ENST00000445265 ZNF830Q96NB3 372 aaPredicted RBP19.4■□□□□ 0.7
TCOF1-206ENST00000445265 SSH2Q76I76 1423 aa19.4■□□□□ 0.7
TCOF1-206ENST00000445265 BRD1O95696 1058 aa19.4■□□□□ 0.7
TCOF1-206ENST00000445265 CEP131Q9UPN4 1083 aa19.4■□□□□ 0.7
TCOF1-206ENST00000445265 SNX14Q9Y5W7 946 aa19.39■□□□□ 0.69
TCOF1-206ENST00000445265 ANO6Q4KMQ2 910 aa19.39■□□□□ 0.69
TCOF1-206ENST00000445265 ERCC4Q92889 916 aaPredicted RBP19.39■□□□□ 0.69
TCOF1-206ENST00000445265 HSPA4P34932 840 aa19.39■□□□□ 0.69
TCOF1-206ENST00000445265 TTC12Q9H892 705 aaPredicted RBP19.39■□□□□ 0.69
TCOF1-206ENST00000445265 USP16Q9Y5T5 823 aa19.39■□□□□ 0.69
TCOF1-206ENST00000445265 CLSTN1O94985 981 aa19.38■□□□□ 0.69
TCOF1-206ENST00000445265 LRRC59Q96AG4 307 aaKnown RBP19.38■□□□□ 0.69
TCOF1-206ENST00000445265 ZBTB3Q9H5J0 574 aa19.38■□□□□ 0.69
TCOF1-206ENST00000445265 TMOD3Q9NYL9 352 aa19.38■□□□□ 0.69
TCOF1-206ENST00000445265 ORC3Q9UBD5 711 aaPredicted RBP19.38■□□□□ 0.69
TCOF1-206ENST00000445265 CCDC196A0A1B0GTZ2 297 aa19.38■□□□□ 0.69
TCOF1-206ENST00000445265 DDX21Q9NR30 783 aaKnown RBP eCLIP19.38■□□□□ 0.69
TCOF1-206ENST00000445265 UBXN4Q92575 508 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 TYRO3Q06418 890 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 HSP90AB3PQ58FF7 597 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 Q6ZUG5 572 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 NAPBQ9H115 298 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 YEATS2Q9ULM3 1422 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 RNMTO43148 476 aaKnown RBP19.37■□□□□ 0.69
TCOF1-206ENST00000445265 ZFYP08048 801 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-206ENST00000445265 SLC39A6Q13433 755 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 LRP2BPQ9P2M1 347 aa19.37■□□□□ 0.69
TCOF1-206ENST00000445265 MAGEC2Q9UBF1 373 aaPredicted RBP19.37■□□□□ 0.69
TCOF1-206ENST00000445265 ZSCAN12O43309 604 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 UBE2Q2Q8WVN8 375 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 JARID2Q92833 1246 aaPredicted RBP19.36■□□□□ 0.69
TCOF1-206ENST00000445265 NCOA7Q8NI08 942 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 SSH3Q8TE77 659 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 OSBPL3Q9H4L5 887 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 PAXBP1Q9Y5B6 917 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 RNF17Q9BXT8 1623 aaKnown RBP19.36■□□□□ 0.69
TCOF1-206ENST00000445265 TTLL5Q6EMB2 1281 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 LMBR1LQ6UX01 489 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 FAM177A1Q8N128 213 aaPredicted RBP19.36■□□□□ 0.69
TCOF1-206ENST00000445265 PPP1R9BQ96SB3 815 aa19.36■□□□□ 0.69
TCOF1-206ENST00000445265 CGNQ9P2M7 1197 aaKnown RBP19.36■□□□□ 0.69
TCOF1-206ENST00000445265 IL15P40933 162 aaPredicted RBP19.35■□□□□ 0.69
TCOF1-206ENST00000445265 CCDC186Q7Z3E2 898 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.35■□□□□ 0.69
TCOF1-206ENST00000445265 ERCC6L2Q5T890 1561 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 PTCH1Q13635 1447 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 ABCC3O15438 1527 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 KCNA6P17658 529 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 HECW2Q9P2P5 1572 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 MAP3K12Q12852 859 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 STK11IPQ8N1F8 1099 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 TMEM2Q9UHN6 1383 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 TMEM63CQ9P1W3 806 aa19.35■□□□□ 0.69
TCOF1-206ENST00000445265 CPA1P15085 419 aa19.34■□□□□ 0.69
TCOF1-206ENST00000445265 IGHMBP2P38935 993 aaKnown RBP19.34■□□□□ 0.69
TCOF1-206ENST00000445265 STIM1Q13586 685 aa19.34■□□□□ 0.69
TCOF1-206ENST00000445265 TTF1Q15361 905 aaPredicted RBP19.34■□□□□ 0.69
TCOF1-206ENST00000445265 USP44Q9H0E7 712 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms