RNA–Protein interactions for RNA: ENST00000440653.1

HDAC6-209, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 658 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-209ENST00000440653 KDM6AO15550 1401 aaPredicted RBP11.31□□□□□ -0.6
HDAC6-209ENST00000440653 BTBD11A6QL63 1104 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 HSP90AB1P08238 724 aaKnown RBP11.3□□□□□ -0.6
HDAC6-209ENST00000440653 SSFA2P28290 1259 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 DALRD3Q5D0E6 543 aaKnown RBP11.3□□□□□ -0.6
HDAC6-209ENST00000440653 PRPF38BQ5VTL8 546 aaKnown RBP11.3□□□□□ -0.6
HDAC6-209ENST00000440653 CHADLQ6NUI6 762 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 MCOLN1Q9GZU1 580 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 MIS18AQ9NYP9 233 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 PIM2Q9P1W9 311 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 ARFGEF2Q9Y6D5 1785 aa11.3□□□□□ -0.6
HDAC6-209ENST00000440653 CASC1Q6TDU7 716 aa11.29□□□□□ -0.6
HDAC6-209ENST00000440653 C22orf23Q9BZE7 217 aa11.29□□□□□ -0.6
HDAC6-209ENST00000440653 AFDNP55196 1824 aaKnown RBP11.29□□□□□ -0.6
HDAC6-209ENST00000440653 AOX1Q06278 1338 aa11.29□□□□□ -0.6
HDAC6-209ENST00000440653 RBM25P49756 843 aaKnown RBP11.28□□□□□ -0.6
HDAC6-209ENST00000440653 TTC22Q5TAA0 569 aa11.28□□□□□ -0.6
HDAC6-209ENST00000440653 SLC4A10Q6U841 1118 aa11.28□□□□□ -0.6
HDAC6-209ENST00000440653 G2E3Q7L622 706 aa11.28□□□□□ -0.6
HDAC6-209ENST00000440653 LINC00116Q8NCU8 138 aa11.28□□□□□ -0.6
HDAC6-209ENST00000440653 ZCRB1Q8TBF4 217 aaKnown RBP11.28□□□□□ -0.6
HDAC6-209ENST00000440653 DBF4Q9UBU7 674 aaPredicted RBP11.28□□□□□ -0.6
HDAC6-209ENST00000440653 TSKSQ9UJT2 592 aa11.28□□□□□ -0.6
HDAC6-209ENST00000440653 PASKQ96RG2 1323 aa11.28□□□□□ -0.6
HDAC6-209ENST00000440653 UBTFL1P0CB47 393 aaPredicted RBP11.27□□□□□ -0.61
HDAC6-209ENST00000440653 CHRNA5P30532 468 aa11.27□□□□□ -0.61
HDAC6-209ENST00000440653 MFAP1P55081 439 aaKnown RBP11.27□□□□□ -0.61
HDAC6-209ENST00000440653 SRCIN1Q9C0H9 1055 aa11.27□□□□□ -0.61
HDAC6-209ENST00000440653 CCDC87Q9NVE4 849 aa11.27□□□□□ -0.61
HDAC6-209ENST00000440653 ZC3H4Q9UPT8 1303 aaKnown RBP11.27□□□□□ -0.61
HDAC6-209ENST00000440653 TMEM88BA6NKF7 163 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 F6X3S4 739 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 GNPATO15228 680 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 ALDH1L1O75891 902 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 SEC24BO95487 1268 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 DDX58O95786 925 aaKnown RBP11.26□□□□□ -0.61
HDAC6-209ENST00000440653 MAP2K1Q02750 393 aaPredicted RBP11.26□□□□□ -0.61
HDAC6-209ENST00000440653 MPRIPQ6WCQ1 1025 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 IFNL2Q8IZJ0 200 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 OSBPL3Q9H4L5 887 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 HYPKQ9NX55 129 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 PCDH11XQ9BZA7 1347 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 PCDH11YQ9BZA8 1340 aa11.26□□□□□ -0.61
HDAC6-209ENST00000440653 CCDC88AQ3V6T2 1871 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 PHKG2P15735 406 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 LMNB1P20700 586 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 SOX10P56693 466 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 PLEKHM2Q8IWE5 1019 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 HSCBQ8IWL3 235 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 DNAAF4Q8WXU2 420 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 SLC52A2Q9HAB3 445 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 LGR6Q9HBX8 967 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 CHPF2Q9P2E5 772 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 C4AP0C0L4 1744 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 ERBB4Q15303 1308 aa11.25□□□□□ -0.61
HDAC6-209ENST00000440653 WDR33Q9C0J8 1336 aaKnown RBP11.25□□□□□ -0.61
HDAC6-209ENST00000440653 RAB11FIP3O75154 756 aa11.24□□□□□ -0.61
HDAC6-209ENST00000440653 DEFB115Q30KQ5 88 aa11.24□□□□□ -0.61
HDAC6-209ENST00000440653 HSP90AB4PQ58FF6 505 aa11.24□□□□□ -0.61
HDAC6-209ENST00000440653 TBC1D9Q6ZT07 1266 aa11.24□□□□□ -0.61
HDAC6-209ENST00000440653 LRRCC1Q9C099 1032 aa11.24□□□□□ -0.61
HDAC6-209ENST00000440653 TIAM2Q8IVF5 1701 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 GSPT1P15170 499 aaKnown RBP11.23□□□□□ -0.61
HDAC6-209ENST00000440653 ATP8B2P98198 1209 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 ITPK1Q13572 414 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 NLGN1Q8N2Q7 840 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 IL27Q8NEV9 243 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 SNX21Q969T3 373 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 CASP8AP2Q9UKL3 1982 aa11.23□□□□□ -0.61
HDAC6-209ENST00000440653 RASSF10A6NK89 507 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 ITGBL1O95965 494 aaPredicted RBP11.22□□□□□ -0.61
HDAC6-209ENST00000440653 HMGB2P26583 209 aaKnown RBP11.22□□□□□ -0.61
HDAC6-209ENST00000440653 COL15A1P39059 1388 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 MTX1Q13505 466 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 NBR1Q14596 966 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 ZNF790Q6PG37 636 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 TTC5Q8N0Z6 440 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 SSH3Q8TE77 659 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 SALL3Q9BXA9 1300 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 DDX21Q9NR30 783 aaKnown RBP eCLIP11.22□□□□□ -0.61
HDAC6-209ENST00000440653 LRRFIP2Q9Y608 721 aaKnown RBP11.22□□□□□ -0.61
HDAC6-209ENST00000440653 PARP3Q9Y6F1 533 aa11.22□□□□□ -0.61
HDAC6-209ENST00000440653 TJP1Q07157 1748 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 EPB41L2O43491 1005 aaKnown RBP11.21□□□□□ -0.61
HDAC6-209ENST00000440653 REC8O95072 547 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 GYS1P13807 737 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 EIF2S2P20042 333 aaKnown RBP11.21□□□□□ -0.61
HDAC6-209ENST00000440653 DGKZQ13574 1117 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 POLA2Q14181 598 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 BEND3Q5T5X7 828 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 KSR2Q6VAB6 950 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 USP44Q9H0E7 712 aa11.21□□□□□ -0.61
HDAC6-209ENST00000440653 LOC102724428A0A0B4J2F2 783 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 MX1P20591 662 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 SIK1P57059 783 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 DPY19L2Q6NUT2 758 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 ERC1Q8IUD2 1116 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 NECTIN2Q92692 538 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 FMNL2Q96PY5 1086 aa11.2□□□□□ -0.62
HDAC6-209ENST00000440653 TBC1D2Q9BYX2 928 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 82.2 ms