RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ANXA1P04083 346 aa19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 HSP90AA2PQ14568 343 aaPredicted RBP19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 DBF4Q9UBU7 674 aaPredicted RBP19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 FOXD4L6Q3SYB3 417 aaPredicted RBP19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 FOXD4L3Q6VB84 417 aaPredicted RBP19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 RUFY2Q8WXA3 655 aa19.7■□□□□ 0.74
CLCNKA-203ENST00000439316 HEG1Q9ULI3 1381 aa19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 OS9Q13438 667 aaPredicted RBP19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 CLASRPQ8N2M8 674 aaKnown RBP19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 KCNB2Q92953 911 aa19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 DCAF5Q96JK2 942 aa19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 DIAPH3Q9NSV4 1193 aa19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 PLCH1Q4KWH8 1693 aa19.69■□□□□ 0.74
CLCNKA-203ENST00000439316 STX6O43752 255 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 SLC52A2Q9HAB3 445 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 ECHDC1Q9NTX5 307 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 PCDH11XQ9BZA7 1347 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 PCDH11YQ9BZA8 1340 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 SYT1P21579 422 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 ERC1Q8IUD2 1116 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 NFATC2IPQ8NCF5 419 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 CNPY2Q9Y2B0 182 aa19.68■□□□□ 0.74
CLCNKA-203ENST00000439316 CASTP20810 708 aaKnown RBP19.67■□□□□ 0.74
CLCNKA-203ENST00000439316 CCDC183Q5T5S1 534 aa19.67■□□□□ 0.74
CLCNKA-203ENST00000439316 FAM184AQ8NB25 1140 aa19.67■□□□□ 0.74
CLCNKA-203ENST00000439316 HYPKQ9NX55 129 aa19.67■□□□□ 0.74
CLCNKA-203ENST00000439316 MAP3K2Q9Y2U5 619 aa19.67■□□□□ 0.74
CLCNKA-203ENST00000439316 F13A1P00488 732 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 GPATCH3Q96I76 525 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 TM6SF1Q9BZW5 370 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 SMC3Q9UQE7 1217 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 SHANK3Q9BYB0 1731 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 LARGE1O95461 756 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 PTH1RQ03431 593 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 UVSSAQ2YD98 709 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 VPS53Q5VIR6 699 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 KSR2Q6VAB6 950 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 HDAC5Q9UQL6 1122 aa19.66■□□□□ 0.74
CLCNKA-203ENST00000439316 GIGYF1O75420 1035 aaPredicted RBP19.65■□□□□ 0.74
CLCNKA-203ENST00000439316 UBE2HP62256 183 aa19.65■□□□□ 0.74
CLCNKA-203ENST00000439316 PROSER3Q2NL68 480 aa19.65■□□□□ 0.74
CLCNKA-203ENST00000439316 DDX54Q8TDD1 881 aaKnown RBP19.65■□□□□ 0.74
CLCNKA-203ENST00000439316 C9orf78Q9NZ63 289 aaPredicted RBP19.65■□□□□ 0.74
CLCNKA-203ENST00000439316 CSPP1Q1MSJ5 1256 aa19.64■□□□□ 0.74
CLCNKA-203ENST00000439316 EVI5LQ96CN4 794 aa19.64■□□□□ 0.74
CLCNKA-203ENST00000439316 LARP6Q9BRS8 491 aaKnown RBP19.64■□□□□ 0.74
CLCNKA-203ENST00000439316 ZSWIM6Q9HCJ5 1215 aa19.64■□□□□ 0.74
CLCNKA-203ENST00000439316 ATP6V1DQ9Y5K8 247 aa19.64■□□□□ 0.74
CLCNKA-203ENST00000439316 LETM1O95202 739 aaPredicted RBP19.64■□□□□ 0.73
CLCNKA-203ENST00000439316 IFIT2P09913 472 aaKnown RBP19.64■□□□□ 0.73
CLCNKA-203ENST00000439316 CPA1P15085 419 aa19.64■□□□□ 0.73
CLCNKA-203ENST00000439316 SLC39A6Q13433 755 aa19.64■□□□□ 0.73
CLCNKA-203ENST00000439316 ZSCAN31Q96LW9 406 aaPredicted RBP19.64■□□□□ 0.73
CLCNKA-203ENST00000439316 PDRG1Q9NUG6 133 aa19.64■□□□□ 0.73
CLCNKA-203ENST00000439316 PRPF40BQ6NWY9 871 aaKnown RBP19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 KLHL34Q8N239 644 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 JAKMIP1Q96N16 626 aaKnown RBP19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 SH2B1Q9NRF2 756 aaPredicted RBP19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 PA2G4Q9UQ80 394 aaKnown RBP19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 MRC1P22897 1456 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 UTYO14607 1347 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 CCDC171Q6TFL3 1326 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 NRAPQ86VF7 1730 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 NECTIN1Q15223 517 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 ADCK5Q3MIX3 580 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 ZNF790Q6PG37 636 aa19.63■□□□□ 0.73
CLCNKA-203ENST00000439316 CABP4P57796 275 aa19.62■□□□□ 0.73
CLCNKA-203ENST00000439316 CWF19L2Q2TBE0 894 aaKnown RBP19.62■□□□□ 0.73
CLCNKA-203ENST00000439316 CCDC83Q8IWF9 413 aa19.62■□□□□ 0.73
CLCNKA-203ENST00000439316 R3HCC1Q9Y3T6 440 aaKnown RBP19.62■□□□□ 0.73
CLCNKA-203ENST00000439316 CYP46A1Q9Y6A2 500 aa19.62■□□□□ 0.73
CLCNKA-203ENST00000439316 JCADQ9P266 1359 aa19.62■□□□□ 0.73
CLCNKA-203ENST00000439316 GJB2P29033 226 aa19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 ST3GAL1Q11201 340 aa19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 AACSQ86V21 672 aa19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 SNRKQ9NRH2 765 aa19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 MTMR6Q9Y217 621 aa19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 NKX1-1Q15270 411 aaPredicted RBP19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 LINS1Q8NG48 757 aa19.61■□□□□ 0.73
CLCNKA-203ENST00000439316 DISP2A7MBM2 1401 aa19.6■□□□□ 0.73
CLCNKA-203ENST00000439316 GRM8O00222 908 aa19.6■□□□□ 0.73
CLCNKA-203ENST00000439316 HIP1O00291 1037 aa19.6■□□□□ 0.73
CLCNKA-203ENST00000439316 KAZALD1Q96I82 304 aa19.6■□□□□ 0.73
CLCNKA-203ENST00000439316 SUCLG2Q96I99 432 aa19.6■□□□□ 0.73
CLCNKA-203ENST00000439316 PRAMEF22A3QJZ6 481 aa19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 FIBPO43427 364 aa19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 PTMAP06454 111 aaKnown RBP19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 RBM8AQ9Y5S9 174 aaKnown RBP19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 KAT6BQ8WYB5 2073 aa19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 NWD2Q9ULI1 1742 aa19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 SASH1O94885 1247 aa19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP19.59■□□□□ 0.73
CLCNKA-203ENST00000439316 ZKSCAN1P17029 563 aaPredicted RBP19.58■□□□□ 0.73
CLCNKA-203ENST00000439316 CREB3L3Q68CJ9 461 aa19.58■□□□□ 0.73
CLCNKA-203ENST00000439316 FUCA2Q9BTY2 467 aa19.58■□□□□ 0.73
CLCNKA-203ENST00000439316 SLIT2O94813 1529 aa19.58■□□□□ 0.72
CLCNKA-203ENST00000439316 SPATA31A1Q5TZJ5 1347 aa19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 WNK3Q9BYP7 1800 aa19.57■□□□□ 0.72
CLCNKA-203ENST00000439316 ERVV-2B6SEH9 535 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms