RNA–Protein interactions for RNA: ENST00000434472.6

CD44-210, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-210ENST00000434472 TMEM87AQ8NBN3 555 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 FOXD4L4Q8WXT5 416 aaPredicted RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 ZNF496Q96IT1 587 aaPredicted RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 ZSCAN22P10073 491 aaPredicted RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 CABP4P57796 275 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 PTH1RQ03431 593 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 NECTIN1Q15223 517 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 HS1BP3Q53T59 392 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 PRPF40BQ6NWY9 871 aaKnown RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 RUFY3Q7L099 469 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 MAP4K1Q92918 833 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 JAKMIP1Q96N16 626 aaKnown RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 CCDC8Q9H0W5 538 aaPredicted RBP12.51□□□□□ -0.41
CD44-210ENST00000434472 RFX7Q2KHR2 1363 aa12.51□□□□□ -0.41
CD44-210ENST00000434472 SPATA31A3Q5VYP0 1347 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 RPAP1Q9BWH6 1393 aaPredicted RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 KCNJ4P48050 445 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 NMIQ13287 307 aaPredicted RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 ANKRD1Q15327 319 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 RABL6Q3YEC7 729 aaPredicted RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 LRP10Q7Z4F1 713 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 PLBD2Q8NHP8 589 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 FSD1Q9BTV5 496 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 ALDH8A1Q9H2A2 487 aaPredicted RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 TMEM63CQ9P1W3 806 aa12.5□□□□□ -0.41
CD44-210ENST00000434472 RBM27Q9P2N5 1060 aaKnown RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 RBM8AQ9Y5S9 174 aaKnown RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 PARP4Q9UKK3 1724 aaKnown RBP12.5□□□□□ -0.41
CD44-210ENST00000434472 CYP27B1O15528 508 aa12.49□□□□□ -0.41
CD44-210ENST00000434472 STX6O43752 255 aa12.49□□□□□ -0.41
CD44-210ENST00000434472 LETM1O95202 739 aaPredicted RBP12.49□□□□□ -0.41
CD44-210ENST00000434472 CREB3L3Q68CJ9 461 aa12.49□□□□□ -0.41
CD44-210ENST00000434472 TICAM2Q86XR7 235 aa12.49□□□□□ -0.41
CD44-210ENST00000434472 RBSNQ9H1K0 784 aa12.49□□□□□ -0.41
CD44-210ENST00000434472 HMG20BQ9P0W2 317 aa12.49□□□□□ -0.41
CD44-210ENST00000434472 ATP5JP18859 108 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 PRIM1P49642 420 aaKnown RBP12.48□□□□□ -0.41
CD44-210ENST00000434472 SIL1Q9H173 461 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 USP16Q9Y5T5 823 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 LAMB4A4D0S4 1761 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 F13A1P00488 732 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 RFX5P48382 616 aaPredicted RBP12.48□□□□□ -0.41
CD44-210ENST00000434472 USP48Q86UV5 1035 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 BOLA2Q9H3K6 86 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 TSPY26PQ9H489 355 aa12.48□□□□□ -0.41
CD44-210ENST00000434472 JCADQ9P266 1359 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 MED23Q9ULK4 1368 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 SYCE3A1L190 88 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 ERVV-2B6SEH9 535 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 SLC27A2O14975 620 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 SYT1P21579 422 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 PTPN12Q05209 780 aaKnown RBP12.47□□□□□ -0.41
CD44-210ENST00000434472 KRT32Q14532 448 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 TSGA10IPQ3SY00 556 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 TNNI3KQ59H18 835 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 EPHA10Q5JZY3 1008 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 ZSCAN30Q86W11 494 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 FPGT-TNNI3KV9GXZ4 949 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 PCDH11XQ9BZA7 1347 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 PCDH11YQ9BZA8 1340 aa12.47□□□□□ -0.41
CD44-210ENST00000434472 A0A087WZG4 1122 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 CHRNA2Q15822 529 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 BLOC1S2Q6QNY1 142 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 CCDC83Q8IWF9 413 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 CABLES1Q8TDN4 633 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 PDLIM2Q96JY6 352 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 FAM227BQ96M60 508 aa12.46□□□□□ -0.41
CD44-210ENST00000434472 TLR7Q9NYK1 1049 aaKnown RBP12.46□□□□□ -0.41
CD44-210ENST00000434472 NSFL1CQ9UNZ2 370 aaKnown RBP12.46□□□□□ -0.41
CD44-210ENST00000434472 PDCP20941 246 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 GJB2P29033 226 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 UBE2HP62256 183 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 ADCK5Q3MIX3 580 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 CCDC183Q5T5S1 534 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 FAM184AQ8NB25 1140 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 ZCRB1Q8TBF4 217 aaKnown RBP12.45□□□□□ -0.42
CD44-210ENST00000434472 DDX17Q92841 729 aaKnown RBP12.45□□□□□ -0.42
CD44-210ENST00000434472 GPR108Q9NPR9 543 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 WDR17Q8IZU2 1322 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 STRCP1A6NGW2 1772 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 ARFGEF2Q9Y6D5 1785 aa12.45□□□□□ -0.42
CD44-210ENST00000434472 A0A0D9SFI3 127 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 H7C1W4 665 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 MSNP26038 577 aaKnown RBP12.44□□□□□ -0.42
CD44-210ENST00000434472 CASP7P55210 303 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 TFCP2Q12800 502 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 UVSSAQ2YD98 709 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 UBE3BQ7Z3V4 1068 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 CHAMP1Q96JM3 812 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 U3KPZ7 1027 aaPredicted RBP12.44□□□□□ -0.42
CD44-210ENST00000434472 AFDNP55196 1824 aaKnown RBP12.44□□□□□ -0.42
CD44-210ENST00000434472 LARGE1O95461 756 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 CPA1P15085 419 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 RPS6KB1P23443 525 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 USPL1Q5W0Q7 1092 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 KLHDC4Q8TBB5 520 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 MTMR6Q9Y217 621 aa12.44□□□□□ -0.42
CD44-210ENST00000434472 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.44□□□□□ -0.42
CD44-210ENST00000434472 GADD45BO75293 160 aaPredicted RBP12.43□□□□□ -0.42
CD44-210ENST00000434472 TAF5LO75529 589 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms