RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 MICALL2Q8IY33 904 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 PGBD3Q8N328 593 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 NEDD1Q8NHV4 660 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 DEFB118Q96PH6 123 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 LRFN2Q9ULH4 789 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 NSFL1CQ9UNZ2 370 aaKnown RBP3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 ROCK1Q13464 1354 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 DPEP1P16444 411 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 PRMT2P55345 433 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 TRPM4Q8TD43 1214 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 MTUS1Q9ULD2 1270 aa3.45□□□□□ -1.86
CCDC88A-205ENST00000426576 PTPN13Q12923 2485 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 KIF27Q86VH2 1401 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 SEMA3EO15041 775 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 NADKO95544 446 aaPredicted RBP3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 DLGAP5Q15398 846 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 DAB2IPQ5VWQ8 1189 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 ATF7IPQ6VMQ6 1270 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 AOC2O75106 756 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 RBM17Q96I25 401 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 RNF123Q5XPI4 1314 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 GPR25O00155 361 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 AFMP43652 599 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 ERMP1Q7Z2K6 904 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 ZCRB1Q8TBF4 217 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 PAGR1Q9BTK6 254 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 TCOF1Q13428 1488 aaKnown RBP3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 CARMIL1Q5VZK9 1371 aa3.44□□□□□ -1.86
CCDC88A-205ENST00000426576 PPP1R12AO14974 1030 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 OSBPP22059 807 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 GRK4P32298 578 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 OS9Q13438 667 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 COL9A2Q14055 689 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 SGO2Q562F6 1265 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 DHX37Q8IY37 1157 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 YAF2Q8IY57 180 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 RPUSD2Q8IZ73 545 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ABI1Q8IZP0 508 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 GPR161Q8N6U8 529 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 GTF3C2Q8WUA4 911 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 MYLIPQ8WY64 445 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ACSF2Q96CM8 615 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ORAI2Q96SN7 254 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 AP5M1Q9H0R1 490 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 EPC1Q9H2F5 836 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 GPCPD1Q9NPB8 672 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 DOK7Q18PE1 504 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 TBC1D10BQ4KMP7 808 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 C16orf59Q7L2K0 433 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 TMEM199Q8N511 208 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 DDX11Q96FC9 970 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 CFAP53Q96M91 514 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 STXBP5LQ9Y2K9 1186 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 SHANK2Q9UPX8 1470 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 MED1Q15648 1581 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 FGD5Q6ZNL6 1462 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 PLEKHO1Q53GL0 409 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 KIAA2013Q8IYS2 634 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 TDHQ8IZJ6 230 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 DDX21Q9NR30 783 aaKnown RBP eCLIP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 NUDCQ9Y266 331 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 FAM186AA6NE01 2351 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 UHRF1BP1LA0JNW5 1464 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ZKSCAN1P17029 563 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 BRPF1P55201 1214 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 DPYDQ12882 1025 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 FAM117BQ6P1L5 589 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ZNF530Q6P9A1 599 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 MPHOSPH8Q99549 860 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 SENP6Q9GZR1 1112 aaPredicted RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 NYXQ9GZU5 481 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 ADARB2Q9NS39 739 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 LHX6Q9UPM6 363 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 THRAP3Q9Y2W1 955 aaKnown RBP3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 AK5Q9Y6K8 562 aa3.43□□□□□ -1.86
CCDC88A-205ENST00000426576 SSH2Q76I76 1423 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 MARCH6O60337 910 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 BRD1O95696 1058 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 RNASELQ05823 741 aaKnown RBP3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 GJD3Q8N144 294 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 NLGN2Q8NFZ4 835 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PTPDC1A2A3K4 754 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 M0QZ92 97 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 KCNA5P22460 613 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PPARDQ03181 441 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 KCNC4Q03721 635 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 CCDC155Q8N6L0 562 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 HLA-CQ95604 372 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 RPGRIP1Q96KN7 1286 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 ZHX3Q9H4I2 956 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 WBP1LQ9NX94 342 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 COG5Q9UP83 839 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 IQSEC3Q9UPP2 1182 aaPredicted RBP3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 TRAK1Q9UPV9 953 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 TRPC6Q9Y210 931 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 SLC4A7Q9Y6M7 1214 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 NCAPD3P42695 1498 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 PTPRUQ92729 1446 aa3.42□□□□□ -1.86
CCDC88A-205ENST00000426576 DOPEY1Q5JWR5 2465 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 778.9 ms