RNA–Protein interactions for RNA: ENST00000424478.5

PRPF39-202, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 3,174 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-202ENST00000424478 SSFA2P28290 1259 aa16.92■□□□□ 0.3
PRPF39-202ENST00000424478 R3HDM1Q15032 1099 aaKnown RBP16.92■□□□□ 0.3
PRPF39-202ENST00000424478 EPHA10Q5JZY3 1008 aa16.92■□□□□ 0.3
PRPF39-202ENST00000424478 CWC25Q9NXE8 425 aaPredicted RBP16.92■□□□□ 0.3
PRPF39-202ENST00000424478 BCORQ6W2J9 1755 aa16.92■□□□□ 0.3
PRPF39-202ENST00000424478 ERVV-1B6SEH8 477 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 GRM8O00222 908 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 SKAP1Q86WV1 359 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 CCDC125Q86Z20 511 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 SUCLG2Q96I99 432 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 ATP10DQ9P241 1426 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 UBTFL1P0CB47 393 aaPredicted RBP16.91■□□□□ 0.3
PRPF39-202ENST00000424478 PXDNLA1KZ92 1463 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 ZNF34Q8IZ26 560 aa16.91■□□□□ 0.3
PRPF39-202ENST00000424478 TRMT112Q9UI30 125 aaKnown RBP16.91■□□□□ 0.3
PRPF39-202ENST00000424478 NFIXQ14938 502 aa16.9■□□□□ 0.3
PRPF39-202ENST00000424478 KAZALD1Q96I82 304 aa16.9■□□□□ 0.3
PRPF39-202ENST00000424478 SCN7AQ01118 1682 aa16.9■□□□□ 0.3
PRPF39-202ENST00000424478 HCLS1P14317 486 aaPredicted RBP16.9■□□□□ 0.3
PRPF39-202ENST00000424478 ANKRD36CQ5JPF3 1778 aa16.89■□□□□ 0.3
PRPF39-202ENST00000424478 IGHDP01880 384 aa16.89■□□□□ 0.3
PRPF39-202ENST00000424478 ALDH1L1O75891 902 aa16.89■□□□□ 0.29
PRPF39-202ENST00000424478 SIRT2Q8IXJ6 389 aa16.89■□□□□ 0.29
PRPF39-202ENST00000424478 N4BP2Q86UW6 1770 aaPredicted RBP16.89■□□□□ 0.29
PRPF39-202ENST00000424478 CCDC136Q96JN2 1154 aa16.89■□□□□ 0.29
PRPF39-202ENST00000424478 ZNF652Q9Y2D9 606 aa16.88■□□□□ 0.29
PRPF39-202ENST00000424478 CCDC191Q8NCU4 936 aa16.88■□□□□ 0.29
PRPF39-202ENST00000424478 BICC1Q9H694 974 aaKnown RBP16.88■□□□□ 0.29
PRPF39-202ENST00000424478 PNMA6EA0A0J9YXQ4 647 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 ZBTB7AO95365 584 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 SETDB2Q96T68 719 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 ADRA2BP18089 450 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 DDR1Q08345 913 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 APBB1O00213 710 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 GNAI2P04899 355 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 CASP7P55210 303 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 ERFEQ4G0M1 354 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 KLHDC4Q8TBB5 520 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 CHMP3Q9Y3E7 222 aa16.87■□□□□ 0.29
PRPF39-202ENST00000424478 NPHP1O15259 732 aa16.86■□□□□ 0.29
PRPF39-202ENST00000424478 HSP90AB3PQ58FF7 597 aa16.86■□□□□ 0.29
PRPF39-202ENST00000424478 C3orf67Q6ZVT6 689 aa16.86■□□□□ 0.29
PRPF39-202ENST00000424478 NBPF5PQ86XG9 351 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 PPP4R2Q9NY27 417 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 H7C1W4 665 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 NTSR2O95665 410 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 GNAI3P08754 354 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 GTF2E1P29083 439 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 CEP85Q6P2H3 762 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 CLEC4GQ6UXB4 293 aa16.85■□□□□ 0.29
PRPF39-202ENST00000424478 UTP14AQ9BVJ6 771 aaKnown RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 ATF5Q9Y2D1 282 aaPredicted RBP16.85■□□□□ 0.29
PRPF39-202ENST00000424478 ABCC12Q96J65 1359 aa16.84■□□□□ 0.29
PRPF39-202ENST00000424478 MMP10P09238 476 aa16.84■□□□□ 0.29
PRPF39-202ENST00000424478 IRS4O14654 1257 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-202ENST00000424478 ZBTB38Q8NAP3 1195 aaPredicted RBP16.84■□□□□ 0.29
PRPF39-202ENST00000424478 PPP1R42Q7Z4L9 355 aa16.83■□□□□ 0.29
PRPF39-202ENST00000424478 PA2G4Q9UQ80 394 aaKnown RBP16.83■□□□□ 0.29
PRPF39-202ENST00000424478 CARMIL3Q8ND23 1372 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 TRIM28Q13263 835 aaKnown RBP16.83■□□□□ 0.28
PRPF39-202ENST00000424478 LMBR1LQ6UX01 489 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 ANKRD44Q8N8A2 993 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 SLC51AQ86UW1 340 aa16.83■□□□□ 0.28
PRPF39-202ENST00000424478 SRGAP3O43295 1099 aa16.82■□□□□ 0.28
PRPF39-202ENST00000424478 PCCAP05165 728 aaPredicted RBP16.82■□□□□ 0.28
PRPF39-202ENST00000424478 FOXO4P98177 505 aa16.82■□□□□ 0.28
PRPF39-202ENST00000424478 UTYO14607 1347 aa16.82■□□□□ 0.28
PRPF39-202ENST00000424478 SERPINB2P05120 415 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 TM4SF1P30408 202 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 ZNF594Q96JF6 807 aaPredicted RBP16.81■□□□□ 0.28
PRPF39-202ENST00000424478 SIL1Q9H173 461 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 SH3TC1Q8TE82 1336 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 TAF1P21675 1872 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 POLRMTO00411 1230 aaKnown RBP16.81■□□□□ 0.28
PRPF39-202ENST00000424478 FAM161AQ3B820 660 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 EXOC6BQ9Y2D4 811 aa16.81■□□□□ 0.28
PRPF39-202ENST00000424478 PARP10Q53GL7 1025 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 PRR5LQ6MZQ0 368 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 FLAD1Q8NFF5 587 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 WWC3Q9ULE0 1092 aa16.8■□□□□ 0.28
PRPF39-202ENST00000424478 CNBD1Q8NA66 436 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 GREM2Q9H772 168 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 COL4A1P02462 1669 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 NLGN1Q8N2Q7 840 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 SEC31BQ9NQW1 1179 aa16.79■□□□□ 0.28
PRPF39-202ENST00000424478 DDX60Q8IY21 1712 aaKnown RBP16.78■□□□□ 0.28
PRPF39-202ENST00000424478 TPTE2Q6XPS3 522 aa16.78■□□□□ 0.28
PRPF39-202ENST00000424478 ATP8B2P98198 1209 aa16.77■□□□□ 0.28
PRPF39-202ENST00000424478 COL24A1Q17RW2 1714 aa16.77■□□□□ 0.28
PRPF39-202ENST00000424478 TNRC6CQ9HCJ0 1690 aaKnown RBP16.77■□□□□ 0.28
PRPF39-202ENST00000424478 SMARCA5O60264 1052 aaPredicted RBP16.77■□□□□ 0.27
PRPF39-202ENST00000424478 TTLL11Q8NHH1 800 aa16.77■□□□□ 0.27
PRPF39-202ENST00000424478 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.77■□□□□ 0.27
PRPF39-202ENST00000424478 CTSWP56202 376 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 KLHL34Q8N239 644 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 CHMP4BQ9H444 224 aaKnown RBP16.76■□□□□ 0.27
PRPF39-202ENST00000424478 PARP3Q9Y6F1 533 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 CASZ1Q86V15 1759 aa16.76■□□□□ 0.27
PRPF39-202ENST00000424478 PDE8AO60658 829 aa16.75■□□□□ 0.27
PRPF39-202ENST00000424478 PUS3Q9BZE2 481 aaKnown RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 183.7 ms