RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 DIAPH3Q9NSV4 1193 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 FOXD4L1Q9NU39 408 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 ASAP1Q9ULH1 1129 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 MCM4P33991 863 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 PTPN12Q05209 780 aaKnown RBP18.16■□□□□ 0.5
CBX3-202ENST00000396386 CCDC191Q8NCU4 936 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 RUFY2Q8WXA3 655 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 EVI5LQ96CN4 794 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 IL25Q9H293 177 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 ATG3Q9NT62 314 aa18.16■□□□□ 0.5
CBX3-202ENST00000396386 RAB3GAP1Q15042 981 aa18.15■□□□□ 0.5
CBX3-202ENST00000396386 DNAJC10Q8IXB1 793 aa18.15■□□□□ 0.5
CBX3-202ENST00000396386 CCDC8Q9H0W5 538 aaPredicted RBP18.15■□□□□ 0.5
CBX3-202ENST00000396386 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.15■□□□□ 0.5
CBX3-202ENST00000396386 EXOC5O00471 708 aa18.14■□□□□ 0.49
CBX3-202ENST00000396386 TLR7Q9NYK1 1049 aaKnown RBP18.14■□□□□ 0.49
CBX3-202ENST00000396386 PALD1Q9ULE6 856 aa18.14■□□□□ 0.49
CBX3-202ENST00000396386 STARD3NLO95772 234 aa18.14■□□□□ 0.49
CBX3-202ENST00000396386 MCM2P49736 904 aa18.14■□□□□ 0.49
CBX3-202ENST00000396386 FOXO4P98177 505 aa18.14■□□□□ 0.49
CBX3-202ENST00000396386 KIF6Q6ZMV9 814 aa18.14■□□□□ 0.49
CBX3-202ENST00000396386 CDCA7Q9BWT1 371 aaPredicted RBP18.14■□□□□ 0.49
CBX3-202ENST00000396386 DDX11L8A8MPP1 907 aa18.13■□□□□ 0.49
CBX3-202ENST00000396386 HSPA4P34932 840 aa18.13■□□□□ 0.49
CBX3-202ENST00000396386 LMBR1LQ6UX01 489 aa18.13■□□□□ 0.49
CBX3-202ENST00000396386 KIAA1211Q6ZU35 1233 aa18.13■□□□□ 0.49
CBX3-202ENST00000396386 HIP1O00291 1037 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 NEK4P51957 841 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 CWC27Q6UX04 472 aaKnown RBP18.12■□□□□ 0.49
CBX3-202ENST00000396386 IL27Q8NEV9 243 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 ISCA1Q9BUE6 129 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 LSG1Q9H089 658 aaKnown RBP18.12■□□□□ 0.49
CBX3-202ENST00000396386 CHMP3Q9Y3E7 222 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 TNNI3KQ59H18 835 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 GBP4Q96PP9 640 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 ZNF330Q9Y3S2 320 aaPredicted RBP18.12■□□□□ 0.49
CBX3-202ENST00000396386 FPGT-TNNI3KV9GXZ4 949 aa18.12■□□□□ 0.49
CBX3-202ENST00000396386 CICQ96RK0 1608 aaPredicted RBP18.11■□□□□ 0.49
CBX3-202ENST00000396386 SPATA31A1Q5TZJ5 1347 aa18.11■□□□□ 0.49
CBX3-202ENST00000396386 TFCP2Q12800 502 aa18.11■□□□□ 0.49
CBX3-202ENST00000396386 TNPO1Q92973 898 aaKnown RBP18.11■□□□□ 0.49
CBX3-202ENST00000396386 THRAP3Q9Y2W1 955 aaKnown RBP18.11■□□□□ 0.49
CBX3-202ENST00000396386 ADAMTS2O95450 1211 aa18.1■□□□□ 0.49
CBX3-202ENST00000396386 TCIRG1Q13488 830 aa18.1■□□□□ 0.49
CBX3-202ENST00000396386 CWC22Q9HCG8 908 aaKnown RBP18.09■□□□□ 0.49
CBX3-202ENST00000396386 KAT6BQ8WYB5 2073 aa18.09■□□□□ 0.49
CBX3-202ENST00000396386 MYH3P11055 1940 aa18.09■□□□□ 0.49
CBX3-202ENST00000396386 MAP3K15Q6ZN16 1313 aa18.09■□□□□ 0.49
CBX3-202ENST00000396386 NUP98P52948 1817 aa18.09■□□□□ 0.49
CBX3-202ENST00000396386 RREB1Q92766 1687 aa18.09■□□□□ 0.49
CBX3-202ENST00000396386 RFX7Q2KHR2 1363 aa18.08■□□□□ 0.49
CBX3-202ENST00000396386 TRIM28Q13263 835 aaKnown RBP18.08■□□□□ 0.49
CBX3-202ENST00000396386 SYTL4Q96C24 671 aaPredicted RBP18.08■□□□□ 0.49
CBX3-202ENST00000396386 FSD1Q9BTV5 496 aa18.08■□□□□ 0.49
CBX3-202ENST00000396386 BOLA2Q9H3K6 86 aa18.08■□□□□ 0.49
CBX3-202ENST00000396386 DBNLQ9UJU6 430 aaKnown RBP18.08■□□□□ 0.49
CBX3-202ENST00000396386 ZNF609O15014 1411 aa18.08■□□□□ 0.48
CBX3-202ENST00000396386 ATP5JP18859 108 aa18.07■□□□□ 0.48
CBX3-202ENST00000396386 SLIT2O94813 1529 aa18.07■□□□□ 0.48
CBX3-202ENST00000396386 CYP19A1P11511 503 aaPredicted RBP18.07■□□□□ 0.48
CBX3-202ENST00000396386 NUCB2P80303 420 aa18.07■□□□□ 0.48
CBX3-202ENST00000396386 SNX14Q9Y5W7 946 aa18.07■□□□□ 0.48
CBX3-202ENST00000396386 PCCAP05165 728 aaPredicted RBP18.06■□□□□ 0.48
CBX3-202ENST00000396386 PTMSP20962 102 aa18.06■□□□□ 0.48
CBX3-202ENST00000396386 SSFA2P28290 1259 aa18.06■□□□□ 0.48
CBX3-202ENST00000396386 DDB1Q16531 1140 aa18.06■□□□□ 0.48
CBX3-202ENST00000396386 TMX3Q96JJ7 454 aa18.06■□□□□ 0.48
CBX3-202ENST00000396386 SPEF2Q9C093 1822 aa18.06■□□□□ 0.48
CBX3-202ENST00000396386 IL15P40933 162 aaPredicted RBP18.05■□□□□ 0.48
CBX3-202ENST00000396386 NMIQ13287 307 aaPredicted RBP18.05■□□□□ 0.48
CBX3-202ENST00000396386 HSP90AB3PQ58FF7 597 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 GIGYF2Q6Y7W6 1299 aaKnown RBP18.05■□□□□ 0.48
CBX3-202ENST00000396386 SLC4A9Q96Q91 983 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 GPR108Q9NPR9 543 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 CCDC171Q6TFL3 1326 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 CIAO1O76071 339 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 PRIM1P49642 420 aaKnown RBP18.05■□□□□ 0.48
CBX3-202ENST00000396386 ATG9AQ7Z3C6 839 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 DBNDD2Q9BQY9 259 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 UPF3BQ9BZI7 483 aaKnown RBP18.05■□□□□ 0.48
CBX3-202ENST00000396386 SNRKQ9NRH2 765 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 SPATA31A5Q5VU36 1347 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 SPATA31A7Q8IWB4 1347 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 MED23Q9ULK4 1368 aa18.05■□□□□ 0.48
CBX3-202ENST00000396386 NUTM2BA6NNL0 878 aaPredicted RBP18.04■□□□□ 0.48
CBX3-202ENST00000396386 NUTM2EB1AL46 878 aaPredicted RBP18.04■□□□□ 0.48
CBX3-202ENST00000396386 NUTM2AQ8IVF1 878 aaPredicted RBP18.04■□□□□ 0.48
CBX3-202ENST00000396386 EYA2O00167 538 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 PTH1RQ03431 593 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 CUL4AQ13619 759 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 ZGPATQ8N5A5 531 aaKnown RBP18.03■□□□□ 0.48
CBX3-202ENST00000396386 FAM227BQ96M60 508 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 PLA2G12BQ9BX93 195 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 CDHR2Q9BYE9 1310 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 ZBTB1Q9Y2K1 713 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 CYP2E1P05181 493 aaPredicted RBP18.03■□□□□ 0.48
CBX3-202ENST00000396386 CLEC17AQ6ZS10 378 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 ZBTB38Q8NAP3 1195 aaPredicted RBP18.03■□□□□ 0.48
CBX3-202ENST00000396386 ARXQ96QS3 562 aa18.03■□□□□ 0.48
CBX3-202ENST00000396386 JCADQ9P266 1359 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms