RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 ZPR1O75312 459 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 ATP6V1AP38606 617 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 IFIT5Q13325 482 aaKnown RBP6.73□□□□□ -1.33
RFFL-202ENST00000394597 ZNF496Q96IT1 587 aaPredicted RBP6.73□□□□□ -1.33
RFFL-202ENST00000394597 AKAP2Q9Y2D5 859 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 AXIN2Q9Y2T1 843 aa6.73□□□□□ -1.33
RFFL-202ENST00000394597 GPTP24298 496 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 GTF2A1P52655 376 aaPredicted RBP6.72□□□□□ -1.33
RFFL-202ENST00000394597 NOLC1Q14978 699 aaKnown RBP eCLIP6.72□□□□□ -1.33
RFFL-202ENST00000394597 RHPN1Q8TCX5 695 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 TBC1D2BQ9UPU7 963 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 MYO5BQ9ULV0 1848 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 GTF2F1P35269 517 aaKnown RBP eCLIP6.72□□□□□ -1.33
RFFL-202ENST00000394597 CWF19L2Q2TBE0 894 aaKnown RBP6.72□□□□□ -1.33
RFFL-202ENST00000394597 BICDL1Q6ZP65 573 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 TSC1Q92574 1164 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 JARID2Q92833 1246 aaPredicted RBP6.72□□□□□ -1.33
RFFL-202ENST00000394597 PRDM4Q9UKN5 801 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 ABCC4O15439 1325 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 PSMA5P28066 241 aa6.72□□□□□ -1.33
RFFL-202ENST00000394597 CCDC8Q9H0W5 538 aaPredicted RBP6.72□□□□□ -1.33
RFFL-202ENST00000394597 GOLGA6L19H0YKK7 550 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 BAG4O95429 457 aaKnown RBP6.71□□□□□ -1.33
RFFL-202ENST00000394597 U2AF2P26368 475 aaKnown RBP eCLIP6.71□□□□□ -1.332e-6■■□□□ 12.6
RFFL-202ENST00000394597 CALRP27797 417 aaKnown RBP6.71□□□□□ -1.33
RFFL-202ENST00000394597 IGHMBP2P38935 993 aaKnown RBP6.71□□□□□ -1.33
RFFL-202ENST00000394597 MCM2P49736 904 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 ZSCAN23Q3MJ62 389 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 TTC22Q5TAA0 569 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 CERS3Q8IU89 383 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 CCAR2Q8N163 923 aaKnown RBP6.71□□□□□ -1.33
RFFL-202ENST00000394597 MYRIPQ8NFW9 859 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 ZNF830Q96NB3 372 aaPredicted RBP6.71□□□□□ -1.33
RFFL-202ENST00000394597 CD163L1Q9NR16 1453 aa6.71□□□□□ -1.33
RFFL-202ENST00000394597 NEK4P51957 841 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 TRDNQ13061 729 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 METTL24Q5JXM2 366 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 KRT222Q8N1A0 295 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 NOL10Q9BSC4 688 aaKnown RBP6.71□□□□□ -1.34
RFFL-202ENST00000394597 METTL22Q9BUU2 404 aaPredicted RBP6.71□□□□□ -1.34
RFFL-202ENST00000394597 ECHDC1Q9NTX5 307 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 GNL3LQ9NVN8 582 aaKnown RBP6.71□□□□□ -1.34
RFFL-202ENST00000394597 TNS3Q68CZ2 1445 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 KAT6BQ8WYB5 2073 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 ANKRD18BA2A2Z9 1011 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 PLBD2Q8NHP8 589 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 FEZ1Q99689 392 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 CWC27Q6UX04 472 aaKnown RBP6.71□□□□□ -1.34
RFFL-202ENST00000394597 GAS2L3Q86XJ1 694 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 HOMER1Q86YM7 354 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 FAM184AQ8NB25 1140 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 MNS1Q8NEH6 495 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 DDX24Q9GZR7 859 aaKnown RBP eCLIP6.71□□□□□ -1.34
RFFL-202ENST00000394597 BOLA2Q9H3K6 86 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 USP25Q9UHP3 1055 aa6.71□□□□□ -1.34
RFFL-202ENST00000394597 UBR1Q8IWV7 1749 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 IFT172Q9UG01 1749 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 NCOA3Q9Y6Q9 1424 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 PRIM1P49642 420 aaKnown RBP6.7□□□□□ -1.34
RFFL-202ENST00000394597 TPM4P67936 248 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 FKBP4Q02790 459 aaKnown RBP eCLIP6.7□□□□□ -1.34
RFFL-202ENST00000394597 LEKR1Q6ZMV7 388 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 C16orf71Q8IYS4 520 aaPredicted RBP6.7□□□□□ -1.34
RFFL-202ENST00000394597 OGFRQ9NZT2 677 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 RBM27Q9P2N5 1060 aaKnown RBP6.7□□□□□ -1.34
RFFL-202ENST00000394597 C3P01024 1663 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 A1BGP04217 495 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 PDE1AP54750 535 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 ZSCAN25Q6NSZ9 544 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 LMBR1LQ6UX01 489 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 PPP1R9BQ96SB3 815 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 ATP6V1DQ9Y5K8 247 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 USP16Q9Y5T5 823 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 ZNF500O60304 480 aaPredicted RBP6.7□□□□□ -1.34
RFFL-202ENST00000394597 TBC1D9Q6ZT07 1266 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 AK7Q96M32 723 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 TRIM5Q9C035 493 aa6.7□□□□□ -1.34
RFFL-202ENST00000394597 KDM4FA0A1W2PPD8 638 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 BECN2A8MW95 431 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 SF3B2Q13435 895 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 SYNE3Q6ZMZ3 975 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 DZIP3Q86Y13 1208 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 CWC22Q9HCG8 908 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 LRRC7Q96NW7 1537 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 RBM25P49756 843 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 LDHAL6AQ6ZMR3 332 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 TTC12Q9H892 705 aaPredicted RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 IFIT1P09914 478 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 SDSP20132 328 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 FAM98CQ17RN3 349 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 CPLX2Q6PUV4 134 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 RALYLQ86SE5 291 aaKnown RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 AMOTL1Q8IY63 956 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 EVI5LQ96CN4 794 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 C16orf45Q96MC5 204 aaPredicted RBP6.69□□□□□ -1.34
RFFL-202ENST00000394597 USP21Q9UK80 565 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 SMC3Q9UQE7 1217 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 USP32Q8NFA0 1604 aa6.69□□□□□ -1.34
RFFL-202ENST00000394597 TNNT1P13805 278 aa6.68□□□□□ -1.34
RFFL-202ENST00000394597 GABPB1Q06547 395 aaPredicted RBP6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms