RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TOGARAM1Q9Y4F4 1720 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 PPEF1O14829 653 aaPredicted RBP3.26□□□□□ -1.89
VPS54-202ENST00000354504 FAM69CQ0P6D2 419 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 RGS22Q8NE09 1264 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 GZF1Q9H116 711 aaPredicted RBP3.26□□□□□ -1.89
VPS54-202ENST00000354504 NUP188Q5SRE5 1749 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 PDE4CQ08493 712 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 PKDCCQ504Y2 493 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 TMEM164Q5U3C3 297 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 TRMT44Q8IYL2 757 aaKnown RBP3.26□□□□□ -1.89
VPS54-202ENST00000354504 EP400Q96L91 3159 aa3.26□□□□□ -1.89
VPS54-202ENST00000354504 PTCH1Q13635 1447 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 FAM135BQ49AJ0 1406 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 CICQ96RK0 1608 aaPredicted RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 METP08581 1390 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 ABCC11Q96J66 1382 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 A0A1B0GUL6 1792 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 ZBED9Q6R2W3 1325 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 SETD1BQ9UPS6 1966 aaKnown RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 PHLPP1O60346 1717 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 TSPY4P0CV99 314 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 TSPY10P0CW01 314 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 SOX11P35716 441 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 CLDN10P78369 228 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 HELBQ8NG08 1087 aaPredicted RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 PURBQ96QR8 312 aaKnown RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 USB1Q9BQ65 265 aaKnown RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 TRAIPQ9BWF2 469 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 PRM3Q9NNZ6 103 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 LMTK3Q96Q04 1460 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 SLIT3O75094 1523 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 PLCH1Q4KWH8 1693 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 ARMC2Q8NEN0 867 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 DCAF11Q8TEB1 546 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 CDCA7Q9BWT1 371 aaPredicted RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 OVOS2A0A0J9YW53 1432 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 OVOS2Q6IE36 1432 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 KIF1AQ12756 1690 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 WASHC2CQ9Y4E1 1318 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 SMPD1P17405 629 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 VARSP26640 1264 aaKnown RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 PBXIP1Q96AQ6 731 aa3.25□□□□□ -1.89
VPS54-202ENST00000354504 CDV3Q9UKY7 258 aaKnown RBP3.25□□□□□ -1.89
VPS54-202ENST00000354504 DKK1O94907 266 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 S1PR4O95977 384 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 IDI1Q13907 227 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 CDK12Q9NYV4 1490 aaPredicted RBP3.24□□□□□ -1.89
VPS54-202ENST00000354504 NCOA4Q13772 614 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 WASHC4Q2M389 1173 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 GMCL1Q96IK5 515 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 PUS7Q96PZ0 661 aaKnown RBP3.24□□□□□ -1.89
VPS54-202ENST00000354504 FKBPLQ9UIM3 349 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 LAMB4A4D0S4 1761 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 POLR3AO14802 1390 aaPredicted RBP3.24□□□□□ -1.89
VPS54-202ENST00000354504 TJP1Q07157 1748 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 RPGRIP1LQ68CZ1 1315 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 RREB1Q92766 1687 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 ABCC6O95255 1503 aa3.24□□□□□ -1.89
VPS54-202ENST00000354504 C1QTNF2Q9BXJ5 285 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 NRAPQ86VF7 1730 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 A0A1W2PP64 1363 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 KANK1Q14678 1352 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 RIMS2Q9UQ26 1411 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 CCDC85AQ96PX6 553 aaPredicted RBP3.23□□□□□ -1.89
VPS54-202ENST00000354504 LRRC4BQ9NT99 713 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 GPSM3Q9Y4H4 160 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 ZMYM3Q14202 1370 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 COL22A1Q8NFW1 1626 aaPredicted RBP3.23□□□□□ -1.89
VPS54-202ENST00000354504 USP17L3A6NCW0 530 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 USP17L4A6NCW7 530 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 FAM181BA6NEQ2 426 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 KIF3BO15066 747 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 SCTRP47872 440 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 LINC01559Q495D7 138 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 USP17L2Q6R6M4 530 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 USP17L1Q7RTZ2 530 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 NPM2Q86SE8 214 aaKnown RBP3.23□□□□□ -1.89
VPS54-202ENST00000354504 WWC1Q8IX03 1113 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 PHTF2Q8N3S3 785 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 NFATC2IPQ8NCF5 419 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 FOXJ1Q92949 421 aa3.23□□□□□ -1.89
VPS54-202ENST00000354504 COL16A1Q07092 1604 aaPredicted RBP3.23□□□□□ -1.89
VPS54-202ENST00000354504 ANKRD36BQ8N2N9 1353 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 ROBO2Q9HCK4 1378 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 PLEKHG1Q9ULL1 1385 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 CYP4X1Q8N118 509 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 ZNF592Q92610 1267 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 EVA1BQ9NVM1 165 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 MYBBP1AQ9BQG0 1328 aaKnown RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 ITGB4P16144 1822 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 SERPINB4P48594 390 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 NFX1Q12986 1120 aaKnown RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 NANOS1Q8WY41 292 aaKnown RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 ZNF775Q96BV0 537 aaPredicted RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 ZNF594Q96JF6 807 aaPredicted RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 PLEKHF1Q96S99 279 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 IVNS1ABPQ9Y6Y0 642 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 PPIP5K1Q6PFW1 1433 aa3.22□□□□□ -1.89
VPS54-202ENST00000354504 LZTS3O60299 673 aaPredicted RBP3.22□□□□□ -1.89
VPS54-202ENST00000354504 CTHP32929 405 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms