RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 ATF7IPQ6VMQ6 1270 aa28.13■■■□□ 2.09
SHMT1-203ENST00000354098 SYNE4Q8N205 404 aa28.13■■■□□ 2.09
SHMT1-203ENST00000354098 KLHL34Q8N239 644 aa28.13■■■□□ 2.09
SHMT1-203ENST00000354098 CCDC191Q8NCU4 936 aa28.13■■■□□ 2.09
SHMT1-203ENST00000354098 NPHP1O15259 732 aa28.13■■■□□ 2.09
SHMT1-203ENST00000354098 ZKSCAN2Q63HK3 967 aa28.13■■■□□ 2.09
SHMT1-203ENST00000354098 CWC25Q9NXE8 425 aaPredicted RBP28.13■■■□□ 2.09
SHMT1-203ENST00000354098 TRMT112Q9UI30 125 aaKnown RBP28.13■■■□□ 2.09
SHMT1-203ENST00000354098 ERFEQ4G0M1 354 aa28.12■■■□□ 2.09
SHMT1-203ENST00000354098 NYXQ9GZU5 481 aa28.12■■■□□ 2.09
SHMT1-203ENST00000354098 GTF2E1P29083 439 aaPredicted RBP28.11■■■□□ 2.09
SHMT1-203ENST00000354098 RTL5Q5HYW3 569 aaPredicted RBP28.11■■■□□ 2.09
SHMT1-203ENST00000354098 JARID2Q92833 1246 aaPredicted RBP28.11■■■□□ 2.09
SHMT1-203ENST00000354098 CLUAP1Q96AJ1 413 aa28.11■■■□□ 2.09
SHMT1-203ENST00000354098 FAM89AQ96GI7 184 aa28.1■■■□□ 2.09
SHMT1-203ENST00000354098 FHDC1Q9C0D6 1143 aaPredicted RBP28.1■■■□□ 2.09
SHMT1-203ENST00000354098 IBTKQ9P2D0 1353 aaPredicted RBP28.1■■■□□ 2.09
SHMT1-203ENST00000354098 PLIN1O60240 522 aa28.1■■■□□ 2.09
SHMT1-203ENST00000354098 SRCIN1Q9C0H9 1055 aa28.1■■■□□ 2.09
SHMT1-203ENST00000354098 C10orf71Q711Q0 1435 aa28.09■■■□□ 2.09
SHMT1-203ENST00000354098 GCKRQ14397 625 aa28.09■■■□□ 2.09
SHMT1-203ENST00000354098 ABCC12Q96J65 1359 aa28.09■■■□□ 2.09
SHMT1-203ENST00000354098 ST5P78524 1137 aa28.08■■■□□ 2.09
SHMT1-203ENST00000354098 PXDNLA1KZ92 1463 aa28.07■■■□□ 2.08
SHMT1-203ENST00000354098 ABCC4O15439 1325 aa28.07■■■□□ 2.08
SHMT1-203ENST00000354098 ZBTB38Q8NAP3 1195 aaPredicted RBP28.07■■■□□ 2.08
SHMT1-203ENST00000354098 CD2APQ9Y5K6 639 aa28.07■■■□□ 2.08
SHMT1-203ENST00000354098 SH3TC1Q8TE82 1336 aa28.06■■■□□ 2.08
SHMT1-203ENST00000354098 ALDH1L1O75891 902 aa28.06■■■□□ 2.08
SHMT1-203ENST00000354098 PCCAP05165 728 aaPredicted RBP28.05■■■□□ 2.08
SHMT1-203ENST00000354098 BRIP1Q9BX63 1249 aa28.05■■■□□ 2.08
SHMT1-203ENST00000354098 HCLS1P14317 486 aaPredicted RBP28.04■■■□□ 2.08
SHMT1-203ENST00000354098 SYT17Q9BSW7 474 aa28.04■■■□□ 2.08
SHMT1-203ENST00000354098 RNF123Q5XPI4 1314 aa28.04■■■□□ 2.08
SHMT1-203ENST00000354098 H7C1W4 665 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 RLBP1P12271 317 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 CCT4P50991 539 aaKnown RBP28.03■■■□□ 2.08
SHMT1-203ENST00000354098 NLGN2Q8NFZ4 835 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 KIF13BQ9NQT8 1826 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 ANKRD31Q8N7Z5 1873 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 SLC10A5Q5PT55 438 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 UBE3BQ7Z3V4 1068 aa28.03■■■□□ 2.08
SHMT1-203ENST00000354098 DZIP1LQ8IYY4 767 aaKnown RBP28.03■■■□□ 2.08
SHMT1-203ENST00000354098 INTS3Q68E01 1043 aaKnown RBP28.02■■■□□ 2.08
SHMT1-203ENST00000354098 C3orf67Q6ZVT6 689 aa28.02■■■□□ 2.08
SHMT1-203ENST00000354098 IRS4O14654 1257 aaPredicted RBP28.01■■■□□ 2.07
SHMT1-203ENST00000354098 TMEM57Q8N5G2 664 aa28.01■■■□□ 2.07
SHMT1-203ENST00000354098 CHRNA5P30532 468 aa28■■■□□ 2.07
SHMT1-203ENST00000354098 CASP7P55210 303 aa28■■■□□ 2.07
SHMT1-203ENST00000354098 FTSJ3Q8IY81 847 aaKnown RBP28■■■□□ 2.07
SHMT1-203ENST00000354098 PANK1Q8TE04 598 aa28■■■□□ 2.07
SHMT1-203ENST00000354098 C9orf78Q9NZ63 289 aaPredicted RBP28■■■□□ 2.07
SHMT1-203ENST00000354098 TNRC6CQ9HCJ0 1690 aaKnown RBP28■■■□□ 2.07
SHMT1-203ENST00000354098 A0A0G2JLW4 131 aa28■■■□□ 2.07
SHMT1-203ENST00000354098 GRM8O00222 908 aa28■■■□□ 2.07
SHMT1-203ENST00000354098 PDE6BP35913 854 aa28■■■□□ 2.07
SHMT1-203ENST00000354098 NBPF7P0C2Y1 421 aaPredicted RBP27.99■■■□□ 2.07
SHMT1-203ENST00000354098 DPEP1P16444 411 aa27.99■■■□□ 2.07
SHMT1-203ENST00000354098 TGFB2P61812 414 aa27.99■■■□□ 2.07
SHMT1-203ENST00000354098 USP44Q9H0E7 712 aa27.99■■■□□ 2.07
SHMT1-203ENST00000354098 CDHR2Q9BYE9 1310 aa27.98■■■□□ 2.07
SHMT1-203ENST00000354098 KLRG2A4D1S0 409 aaPredicted RBP27.97■■■□□ 2.07
SHMT1-203ENST00000354098 C20orf194Q5TEA3 1177 aa27.97■■■□□ 2.07
SHMT1-203ENST00000354098 C2CD5Q86YS7 1000 aa27.97■■■□□ 2.07
SHMT1-203ENST00000354098 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.97■■■□□ 2.07
SHMT1-203ENST00000354098 N4BP2Q86UW6 1770 aaPredicted RBP27.97■■■□□ 2.07
SHMT1-203ENST00000354098 DDX60Q8IY21 1712 aaKnown RBP27.97■■■□□ 2.07
SHMT1-203ENST00000354098 KIAA1551Q9HCM1 1747 aa27.97■■■□□ 2.07
SHMT1-203ENST00000354098 NLRP3Q96P20 1036 aa27.97■■■□□ 2.07
SHMT1-203ENST00000354098 RIC1Q4ADV7 1423 aa27.96■■■□□ 2.07
SHMT1-203ENST00000354098 KCNA3P22001 575 aa27.96■■■□□ 2.07
SHMT1-203ENST00000354098 RRP1P56182 461 aaKnown RBP27.96■■■□□ 2.07
SHMT1-203ENST00000354098 H0YIN7 160 aa27.95■■■□□ 2.07
SHMT1-203ENST00000354098 UTYO14607 1347 aa27.95■■■□□ 2.07
SHMT1-203ENST00000354098 SRGNP10124 158 aa27.94■■■□□ 2.06
SHMT1-203ENST00000354098 WWC3Q9ULE0 1092 aa27.94■■■□□ 2.06
SHMT1-203ENST00000354098 PDE8AO60658 829 aa27.94■■■□□ 2.06
SHMT1-203ENST00000354098 CRY2Q49AN0 593 aa27.94■■■□□ 2.06
SHMT1-203ENST00000354098 ITPRIPQ8IWB1 547 aa27.94■■■□□ 2.06
SHMT1-203ENST00000354098 COL11A2P13942 1736 aaPredicted RBP27.93■■■□□ 2.06
SHMT1-203ENST00000354098 MS4A1P11836 297 aa27.93■■■□□ 2.06
SHMT1-203ENST00000354098 MEIS3Q99687 375 aa27.93■■■□□ 2.06
SHMT1-203ENST00000354098 SUPT16HQ9Y5B9 1047 aaKnown RBP27.93■■■□□ 2.06
SHMT1-203ENST00000354098 ZNF622Q969S3 477 aaKnown RBP eCLIP27.91■■■□□ 2.06
SHMT1-203ENST00000354098 KAZALD1Q96I82 304 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 SUCLG2Q96I99 432 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 LAMB2P55268 1798 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 PDE3AQ14432 1141 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 EPHA10Q5JZY3 1008 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 CCDC85AQ96PX6 553 aaPredicted RBP27.91■■■□□ 2.06
SHMT1-203ENST00000354098 PLA2G12BQ9BX93 195 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 PDZRN3Q9UPQ7 1066 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 COG6Q9Y2V7 657 aa27.91■■■□□ 2.06
SHMT1-203ENST00000354098 HSP90B1P14625 803 aaKnown RBP27.9■■■□□ 2.06
SHMT1-203ENST00000354098 SF3B3Q15393 1217 aaKnown RBP27.9■■■□□ 2.06
SHMT1-203ENST00000354098 MASTLQ96GX5 879 aa27.9■■■□□ 2.06
SHMT1-203ENST00000354098 CTSWP56202 376 aa27.89■■■□□ 2.06
SHMT1-203ENST00000354098 FOXO4P98177 505 aa27.89■■■□□ 2.06
SHMT1-203ENST00000354098 NPR1P16066 1061 aa27.88■■■□□ 2.05
SHMT1-203ENST00000354098 TTLL11Q8NHH1 800 aa27.88■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 142.5 ms