RNA–Protein interactions for RNA: ENST00000347559.6

LMNA-201, Transcript of lamin A/C, humanhuman

TSL 5 BASIC

Gene LMNA, Length 3,137 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNA-201ENST00000347559 RNF20Q5VTR2 975 aa18.04■□□□□ 0.48
LMNA-201ENST00000347559 KRBA2Q6ZNG9 492 aa18.04■□□□□ 0.48
LMNA-201ENST00000347559 HOMER1Q86YM7 354 aa18.04■□□□□ 0.48
LMNA-201ENST00000347559 ZCCHC17Q9NP64 241 aaKnown RBP18.04■□□□□ 0.48
LMNA-201ENST00000347559 PPP6R1Q9UPN7 881 aa18.04■□□□□ 0.48
LMNA-201ENST00000347559 TTC21AQ8NDW8 1320 aa18.04■□□□□ 0.48
LMNA-201ENST00000347559 ZKSCAN1P17029 563 aaPredicted RBP18.03■□□□□ 0.48
LMNA-201ENST00000347559 IQCB1Q15051 598 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 TMCO3Q6UWJ1 677 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 PPP1R42Q7Z4L9 355 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 MRFAP1L1Q96HT8 127 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 SOS1Q07889 1333 aaPredicted RBP18.03■□□□□ 0.48
LMNA-201ENST00000347559 ASXL2Q76L83 1435 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 FOSBP53539 338 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 OS9Q13438 667 aaPredicted RBP18.03■□□□□ 0.48
LMNA-201ENST00000347559 TAF7LQ5H9L4 462 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 ZSWIM6Q9HCJ5 1215 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 RSPH14Q9UHP6 348 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 SEC31AO94979 1220 aaKnown RBP18.03■□□□□ 0.48
LMNA-201ENST00000347559 IRX3P78415 501 aaPredicted RBP18.03■□□□□ 0.48
LMNA-201ENST00000347559 ST5P78524 1137 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 C10orf67Q8IYJ2 551 aa18.03■□□□□ 0.48
LMNA-201ENST00000347559 CREBRFQ8IUR6 639 aa18.02■□□□□ 0.48
LMNA-201ENST00000347559 NCKAP5LQ9HCH0 1330 aa18.02■□□□□ 0.48
LMNA-201ENST00000347559 EIF4A2Q14240 407 aaKnown RBP18.02■□□□□ 0.47
LMNA-201ENST00000347559 RBM43Q6ZSC3 357 aaKnown RBP18.02■□□□□ 0.47
LMNA-201ENST00000347559 UBXN4Q92575 508 aa18.02■□□□□ 0.47
LMNA-201ENST00000347559 AOX1Q06278 1338 aa18.02■□□□□ 0.47
LMNA-201ENST00000347559 FAM193AP78312 1265 aa18.01■□□□□ 0.47
LMNA-201ENST00000347559 SRGAP3O43295 1099 aa18.01■□□□□ 0.47
LMNA-201ENST00000347559 RUFY2Q8WXA3 655 aa18.01■□□□□ 0.47
LMNA-201ENST00000347559 AOPEPQ8N6M6 819 aa18.01■□□□□ 0.47
LMNA-201ENST00000347559 USP44Q9H0E7 712 aa18.01■□□□□ 0.47
LMNA-201ENST00000347559 TPM4P67936 248 aa18■□□□□ 0.47
LMNA-201ENST00000347559 SMARCE1Q969G3 411 aa18■□□□□ 0.47
LMNA-201ENST00000347559 ARGLU1Q9NWB6 273 aaPredicted RBP18■□□□□ 0.47
LMNA-201ENST00000347559 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP18■□□□□ 0.477e-11■□□□□ 10.6
LMNA-201ENST00000347559 PTPRMP28827 1452 aa18■□□□□ 0.47
LMNA-201ENST00000347559 KIF2AO00139 706 aaPredicted RBP18■□□□□ 0.47
LMNA-201ENST00000347559 SARM1Q6SZW1 724 aa18■□□□□ 0.47
LMNA-201ENST00000347559 TRIM66O15016 1216 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 STX1AQ16623 288 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 E4F1Q66K89 784 aaPredicted RBP17.99■□□□□ 0.47
LMNA-201ENST00000347559 MNS1Q8NEH6 495 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 PPP1R13BQ96KQ4 1090 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 RBM8AQ9Y5S9 174 aaKnown RBP17.99■□□□□ 0.47
LMNA-201ENST00000347559 KIF20BQ96Q89 1820 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 CCDC34Q96HJ3 373 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 EPC1Q9H2F5 836 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 DNAI1Q9UI46 699 aa17.99■□□□□ 0.47
LMNA-201ENST00000347559 SMC2O95347 1197 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 CCDC191Q8NCU4 936 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 RASSF4Q9H2L5 321 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 CDK12Q9NYV4 1490 aaPredicted RBP17.98■□□□□ 0.47
LMNA-201ENST00000347559 H3BQV1 296 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 IFFO2Q5TF58 517 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 TXLNBQ8N3L3 684 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 FMNL2Q96PY5 1086 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 JAK2O60674 1132 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 GYS2P54840 703 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 CREB3L3Q68CJ9 461 aa17.98■□□□□ 0.47
LMNA-201ENST00000347559 TMC6Q7Z403 805 aa17.97■□□□□ 0.47
LMNA-201ENST00000347559 L2HGDHQ9H9P8 463 aa17.97■□□□□ 0.47
LMNA-201ENST00000347559 CAVIN2O95810 425 aa17.97■□□□□ 0.47
LMNA-201ENST00000347559 CCAR1Q8IX12 1150 aaKnown RBP17.97■□□□□ 0.47
LMNA-201ENST00000347559 SSH3Q8TE77 659 aa17.97■□□□□ 0.47
LMNA-201ENST00000347559 FTOQ9C0B1 505 aaKnown RBP eCLIP17.97■□□□□ 0.47
LMNA-201ENST00000347559 POGZQ7Z3K3 1410 aa17.97■□□□□ 0.47
LMNA-201ENST00000347559 URI1O94763 535 aaPredicted RBP17.96■□□□□ 0.47
LMNA-201ENST00000347559 OAS2P29728 719 aaKnown RBP17.96■□□□□ 0.47
LMNA-201ENST00000347559 BLOC1S2Q6QNY1 142 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 TM6SF1Q9BZW5 370 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 LCMT1Q9UIC8 334 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 NEXMIFQ5QGS0 1516 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 LMTK2Q8IWU2 1503 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 TTC21BQ7Z4L5 1316 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 FAM177A1Q8N128 213 aaPredicted RBP17.96■□□□□ 0.47
LMNA-201ENST00000347559 GSDMDP57764 484 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 ZSCAN26Q16670 478 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 CCDC30Q5VVM6 783 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 DHX40Q8IX18 779 aaKnown RBP17.96■□□□□ 0.47
LMNA-201ENST00000347559 BRF1Q92994 677 aa17.96■□□□□ 0.47
LMNA-201ENST00000347559 GPS2Q13227 327 aa17.95■□□□□ 0.46
LMNA-201ENST00000347559 GNL2Q13823 731 aaKnown RBP17.95■□□□□ 0.46
LMNA-201ENST00000347559 HSP90AB2PQ58FF8 381 aa17.95■□□□□ 0.46
LMNA-201ENST00000347559 NFATC2IPQ8NCF5 419 aa17.95■□□□□ 0.46
LMNA-201ENST00000347559 ORC3Q9UBD5 711 aaPredicted RBP17.95■□□□□ 0.46
LMNA-201ENST00000347559 IFIT2P09913 472 aaKnown RBP17.95■□□□□ 0.46
LMNA-201ENST00000347559 SFPQP23246 707 aaKnown RBP eCLIP17.95■□□□□ 0.46
LMNA-201ENST00000347559 NECTIN1Q15223 517 aa17.95■□□□□ 0.46
LMNA-201ENST00000347559 FAM227BQ96M60 508 aa17.95■□□□□ 0.46
LMNA-201ENST00000347559 TAF6LQ9Y6J9 622 aa17.95■□□□□ 0.46
LMNA-201ENST00000347559 KINO60870 393 aaKnown RBP17.94■□□□□ 0.46
LMNA-201ENST00000347559 GLRX3O76003 335 aaKnown RBP17.94■□□□□ 0.46
LMNA-201ENST00000347559 CCDC73Q6ZRK6 1079 aa17.94■□□□□ 0.46
LMNA-201ENST00000347559 CARD6Q9BX69 1037 aa17.94■□□□□ 0.46
LMNA-201ENST00000347559 TUBGCP6Q96RT7 1819 aa17.94■□□□□ 0.46
LMNA-201ENST00000347559 MYO1CO00159 1063 aa17.94■□□□□ 0.46
LMNA-201ENST00000347559 PPFIA3O75145 1194 aa17.94■□□□□ 0.46
LMNA-201ENST00000347559 CEP57L1Q8IYX8 460 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms