RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PRIM1P49642 420 aaKnown RBP13.31□□□□□ -0.28
VPS39-201ENST00000318006 BICDL1Q6ZP65 573 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 CCDC186Q7Z3E2 898 aa13.31□□□□□ -0.28
VPS39-201ENST00000318006 MRPL50Q8N5N7 158 aaKnown RBP13.3□□□□□ -0.28
VPS39-201ENST00000318006 MEIS3Q99687 375 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 TUBB4AP04350 444 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 PAFAH1B1P43034 410 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 GIMAP6Q6P9H5 292 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 KLHL34Q8N239 644 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 FAM200AQ8TCP9 573 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 WASF1Q92558 559 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 ABCF2Q9UG63 623 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 GNG11P61952 73 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 EVI5LQ96CN4 794 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.3□□□□□ -0.28
VPS39-201ENST00000318006 ABCA8O94911 1581 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 A0A1W2PP64 1363 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 TERF1P54274 439 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 RAB3GAP1Q15042 981 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 CEP131Q9UPN4 1083 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 NPATQ14207 1427 aa13.3□□□□□ -0.28
VPS39-201ENST00000318006 ANKRD62A6NC57 917 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 SKILP12757 684 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 EZRP15311 586 aaKnown RBP13.29□□□□□ -0.28
VPS39-201ENST00000318006 FSIP1Q8NA03 581 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 ZBTB3Q9H5J0 574 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 ANXA1P04083 346 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 LUZP1Q86V48 1076 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 SNRPA1P09661 255 aaKnown RBP13.29□□□□□ -0.28
VPS39-201ENST00000318006 GJB2P29033 226 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 SMC5Q8IY18 1101 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 ANKRD44Q8N8A2 993 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 SRRTQ9BXP5 876 aaKnown RBP13.29□□□□□ -0.28
VPS39-201ENST00000318006 RSPH14Q9UHP6 348 aa13.29□□□□□ -0.28
VPS39-201ENST00000318006 TRMT112Q9UI30 125 aaKnown RBP13.29□□□□□ -0.28
VPS39-201ENST00000318006 NF2P35240 595 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 ZFP91Q96JP5 570 aaPredicted RBP13.28□□□□□ -0.28
VPS39-201ENST00000318006 IGSF3O75054 1194 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 HMGB1P09429 215 aaKnown RBP13.28□□□□□ -0.28
VPS39-201ENST00000318006 ATP2B2Q01814 1243 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 TMX3Q96JJ7 454 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 TEX13AQ9BXU3 409 aaPredicted RBP13.28□□□□□ -0.28
VPS39-201ENST00000318006 TMX1Q9H3N1 280 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.28□□□□□ -0.282e-9■■■■■ 257.6
VPS39-201ENST00000318006 TFIP11Q9UBB9 837 aaKnown RBP13.28□□□□□ -0.28
VPS39-201ENST00000318006 NPC1L1Q9UHC9 1359 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 ZFYVE9O95405 1425 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 KDM6BO15054 1643 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 UBE3BQ7Z3V4 1068 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 CCDC12Q8WUD4 166 aaPredicted RBP13.28□□□□□ -0.28
VPS39-201ENST00000318006 FLT4P35916 1363 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 ABCC1P33527 1531 aa13.28□□□□□ -0.28
VPS39-201ENST00000318006 GCC2Q8IWJ2 1684 aa13.27□□□□□ -0.28
VPS39-201ENST00000318006 YTHDC2Q9H6S0 1430 aaKnown RBP13.27□□□□□ -0.28
VPS39-201ENST00000318006 CCDC175P0C221 793 aa13.27□□□□□ -0.28
VPS39-201ENST00000318006 CHRNA2Q15822 529 aa13.27□□□□□ -0.28
VPS39-201ENST00000318006 GOLGA6L10A0A0M3HER8 536 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 EXOC5O00471 708 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 ATP5J2-PTCD1G3V325 749 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 USO1O60763 962 aaKnown RBP13.27□□□□□ -0.29
VPS39-201ENST00000318006 VAMP4O75379 141 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 YEATS4O95619 227 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 ZSCAN22P10073 491 aaPredicted RBP13.27□□□□□ -0.29
VPS39-201ENST00000318006 SOGA3Q5TF21 947 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 RHPN1Q8TCX5 695 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 IFFO1Q0D2I5 559 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 TSHZ3Q63HK5 1081 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 KLHL10Q6JEL2 608 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 RASSF4Q9H2L5 321 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 CWC25Q9NXE8 425 aaPredicted RBP13.27□□□□□ -0.29
VPS39-201ENST00000318006 CHPF2Q9P2E5 772 aa13.27□□□□□ -0.29
VPS39-201ENST00000318006 MAST1Q9Y2H9 1570 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 ANKRD18BA2A2Z9 1011 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 SMC1AQ14683 1233 aaKnown RBP13.26□□□□□ -0.29
VPS39-201ENST00000318006 MTHFSDQ2M296 383 aaKnown RBP13.26□□□□□ -0.29
VPS39-201ENST00000318006 C8orf76Q96K31 380 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.26□□□□□ -0.29
VPS39-201ENST00000318006 TTC31Q49AM3 519 aaPredicted RBP13.26□□□□□ -0.29
VPS39-201ENST00000318006 ANKRD13DQ6ZTN6 518 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 DNAI1Q9UI46 699 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 CHD1O14646 1710 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.26□□□□□ -0.29
VPS39-201ENST00000318006 RLBP1P12271 317 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 CAPN2P17655 700 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 MAP3K12Q12852 859 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 CAVIN4Q5BKX8 364 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 PHACTR3Q96KR7 559 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 NAPBQ9H115 298 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 ZSWIM4Q9H7M6 989 aa13.26□□□□□ -0.29
VPS39-201ENST00000318006 ADAMTS2O95450 1211 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 GBP2P32456 591 aaPredicted RBP13.25□□□□□ -0.29
VPS39-201ENST00000318006 USP48Q86UV5 1035 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 CPLX3Q8WVH0 158 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 NUP88Q99567 741 aaPredicted RBP13.25□□□□□ -0.29
VPS39-201ENST00000318006 SDSP20132 328 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 AKAP4Q5JQC9 854 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 NAA15Q9BXJ9 866 aaKnown RBP13.25□□□□□ -0.29
VPS39-201ENST00000318006 CCDC113Q9H0I3 377 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 TNNQ9UQP3 1299 aa13.25□□□□□ -0.29
VPS39-201ENST00000318006 GPTP24298 496 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms