RNA–Protein interactions for RNA: ENST00000299333.7

SCN3B-201, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 5,665 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-201ENST00000299333 LRCH2Q5VUJ6 765 aa17■□□□□ 0.31
SCN3B-201ENST00000299333 USP48Q86UV5 1035 aa17■□□□□ 0.31
SCN3B-201ENST00000299333 CCDC129Q6ZRS4 1044 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 CTCFLQ8NI51 663 aaPredicted RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 CCDC194A0A1B0GVG4 234 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 PRC1O43663 620 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 PSMD1Q99460 953 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 NAPBQ9H115 298 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 PUF60Q9UHX1 559 aaKnown RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 ZSCAN22P10073 491 aaPredicted RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 TATP17735 454 aaPredicted RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 SMC6Q96SB8 1091 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 THUMPD2Q9BTF0 503 aaKnown RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 IQCGQ9H095 443 aaKnown RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 CCDC8Q9H0W5 538 aaPredicted RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 DNAJC25Q9H1X3 360 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 BTBD11A6QL63 1104 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 ZBTB16Q05516 673 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 AOPEPQ8N6M6 819 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 PRAM1Q96QH2 718 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 FEZ1Q99689 392 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 KIAA1107Q9UPP5 1409 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 RAD54L2Q9Y4B4 1467 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 RHOXF2BP0C7M4 288 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 PTGS1P23219 599 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 RFC1P35251 1148 aaPredicted RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 IFI16Q16666 785 aaKnown RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 DDX46Q7L014 1031 aaKnown RBP16.99■□□□□ 0.31
SCN3B-201ENST00000299333 CAPZA3Q96KX2 299 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 RHOXF2Q9BQY4 288 aa16.99■□□□□ 0.31
SCN3B-201ENST00000299333 U2AF2P26368 475 aaKnown RBP eCLIP16.98■□□□□ 0.31
SCN3B-201ENST00000299333 ZNF213O14771 459 aa16.98■□□□□ 0.31
SCN3B-201ENST00000299333 CYLC1P35663 651 aaPredicted RBP16.98■□□□□ 0.31
SCN3B-201ENST00000299333 CCDC144CPQ8IYA2 1237 aa16.98■□□□□ 0.31
SCN3B-201ENST00000299333 TRIM47Q96LD4 638 aa16.98■□□□□ 0.31
SCN3B-201ENST00000299333 ZFYP08048 801 aaPredicted RBP16.98■□□□□ 0.31
SCN3B-201ENST00000299333 IFIT1P09914 478 aaKnown RBP16.98■□□□□ 0.31
SCN3B-201ENST00000299333 TSNARE1Q96NA8 513 aa16.98■□□□□ 0.31
SCN3B-201ENST00000299333 PIP4K2BP78356 416 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 SYT10Q6XYQ8 523 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 TMX3Q96JJ7 454 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 CABP1Q9NZU7 370 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 CLNS1AP54105 237 aaKnown RBP16.97■□□□□ 0.31
SCN3B-201ENST00000299333 CETN1Q12798 172 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 SMIM23A6NLE4 172 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 RANBP6O60518 1105 aaKnown RBP16.97■□□□□ 0.31
SCN3B-201ENST00000299333 NFE2L2Q16236 605 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 KANK3Q6NY19 840 aa16.97■□□□□ 0.31
SCN3B-201ENST00000299333 IFIT3O14879 490 aaKnown RBP16.96■□□□□ 0.31
SCN3B-201ENST00000299333 METTL24Q5JXM2 366 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 USP16Q9Y5T5 823 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 SYKP43405 635 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 TNIP1Q15025 636 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 RAB11FIP4Q86YS3 637 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 AMPD3Q01432 767 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 FCHSD2O94868 740 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 ATF3P18847 181 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 FAM76AQ8TAV0 307 aa16.96■□□□□ 0.31
SCN3B-201ENST00000299333 KARSQ15046 597 aaKnown RBP16.96■□□□□ 0.3
SCN3B-201ENST00000299333 RRS1Q15050 365 aaKnown RBP16.96■□□□□ 0.3
SCN3B-201ENST00000299333 BMP2KLQ5H9B9 411 aa16.96■□□□□ 0.3
SCN3B-201ENST00000299333 TTC14Q96N46 770 aa16.96■□□□□ 0.3
SCN3B-201ENST00000299333 MKNK2Q9HBH9 465 aa16.96■□□□□ 0.3
SCN3B-201ENST00000299333 TIAM1Q13009 1591 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 NKTRP30414 1462 aaKnown RBP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 DUSP27Q5VZP5 1158 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 CALML4Q96GE6 196 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 NOL3O60936 208 aaKnown RBP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 FAM160A1Q05DH4 1040 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 RRAGBQ5VZM2 374 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 STMN4Q9H169 189 aaPredicted RBP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 ORC3Q9UBD5 711 aaPredicted RBP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 IGHDP01880 384 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 SELENOOQ9BVL4 669 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 FEZ2Q9UHY8 353 aaPredicted RBP16.95■□□□□ 0.3
SCN3B-201ENST00000299333 RASAL2Q9UJF2 1139 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 ERBINQ96RT1 1412 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 ACTN2P35609 894 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 TCP11L1Q9NUJ3 509 aa16.95■□□□□ 0.3
SCN3B-201ENST00000299333 TACC1O75410 805 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 GRIPAP1Q4V328 841 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 DACT1Q9NYF0 836 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 GPRASP1Q5JY77 1395 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 TUBB4AP04350 444 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 FERMT2Q96AC1 680 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 CTAGE1Q96RT6 745 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 FAM114A2Q9NRY5 505 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 STIM2Q9P246 746 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 KRT13P13646 458 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 IARSP41252 1262 aaKnown RBP16.94■□□□□ 0.3
SCN3B-201ENST00000299333 NECAB1Q8N987 351 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 DDX12PQ92771 950 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 CDK19Q9BWU1 502 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 MMRN2Q9H8L6 949 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 AP1ARQ63HQ0 302 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 IFT81Q8WYA0 676 aa16.94■□□□□ 0.3
SCN3B-201ENST00000299333 CCDC77Q9BR77 488 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 101.7 ms