RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 TMX4Q9H1E5 349 aaPredicted RBP14.13□□□□□ -0.15
SYNGAP1-201ENST00000293748 PSDA5PKW4 1024 aaPredicted RBP14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 MIS18AQ9NYP9 233 aa14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 PDE4CQ08493 712 aa14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 TSPY26PQ9H489 355 aa14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 LRRC37A3O60309 1634 aa14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 SOS1Q07889 1333 aaPredicted RBP14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 SSFA2P28290 1259 aa14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 RC3H1Q5TC82 1133 aaKnown RBP14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 ZNF496Q96IT1 587 aaPredicted RBP14.12□□□□□ -0.15
SYNGAP1-201ENST00000293748 CCDC184Q52MB2 194 aa14.11□□□□□ -0.15
SYNGAP1-201ENST00000293748 WWC1Q8IX03 1113 aa14.11□□□□□ -0.15
SYNGAP1-201ENST00000293748 ERCC4Q92889 916 aaPredicted RBP14.11□□□□□ -0.15
SYNGAP1-201ENST00000293748 PCMTD1Q96MG8 357 aaPredicted RBP14.11□□□□□ -0.15
SYNGAP1-201ENST00000293748 TRDNQ13061 729 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 NLGN1Q8N2Q7 840 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 PARP3Q9Y6F1 533 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 TRIM5Q9C035 493 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 RPS6KA4O75676 772 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 HOXB7P09629 217 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 PDCP20941 246 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 HSP90AB3PQ58FF7 597 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 GRPEL1Q9HAV7 217 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 HEG1Q9ULI3 1381 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 ESPNB1AK53 854 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 CRKLP46109 303 aaKnown RBP14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 FKBP5Q13451 457 aaPredicted RBP14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 PDZRN3Q9UPQ7 1066 aa14.1□□□□□ -0.15
SYNGAP1-201ENST00000293748 CCP110O43303 1012 aa14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 G3BP1Q13283 466 aaKnown RBP eCLIP14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 CWC22Q9HCG8 908 aaKnown RBP14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 CIZ1Q9ULV3 898 aaPredicted RBP14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 ERBB4Q15303 1308 aa14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 DHX8Q14562 1220 aaKnown RBP14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 NECTIN2Q92692 538 aa14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 SDF4Q9BRK5 362 aa14.09□□□□□ -0.15
SYNGAP1-201ENST00000293748 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.08□□□□□ -0.15
SYNGAP1-201ENST00000293748 DUSP27Q5VZP5 1158 aa14.08□□□□□ -0.15
SYNGAP1-201ENST00000293748 KDM6AO15550 1401 aaPredicted RBP14.08□□□□□ -0.15
SYNGAP1-201ENST00000293748 RGPD1P0DJD0 1748 aa14.08□□□□□ -0.15
SYNGAP1-201ENST00000293748 PRPF40AO75400 957 aaKnown RBP14.08□□□□□ -0.16
SYNGAP1-201ENST00000293748 CDCA7LQ96GN5 454 aa14.08□□□□□ -0.16
SYNGAP1-201ENST00000293748 DBF4Q9UBU7 674 aaPredicted RBP14.08□□□□□ -0.16
SYNGAP1-201ENST00000293748 MYL6BP14649 208 aa14.08□□□□□ -0.16
SYNGAP1-201ENST00000293748 TWISTNBQ3B726 338 aaPredicted RBP14.08□□□□□ -0.16
SYNGAP1-201ENST00000293748 CNTNAP4Q9C0A0 1308 aa14.08□□□□□ -0.16
SYNGAP1-201ENST00000293748 PSMA5P28066 241 aa14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 SAFBQ15424 915 aaKnown RBP eCLIP14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 HYPKQ9NX55 129 aa14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 KCNQ4P56696 695 aa14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 RIC3Q7Z5B4 369 aa14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 AIMP1Q12904 312 aaKnown RBP14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 OLFM4Q6UX06 510 aa14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 DZIP3Q86Y13 1208 aaKnown RBP14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 GCC1Q96CN9 775 aa14.07□□□□□ -0.16
SYNGAP1-201ENST00000293748 CHL1O00533 1208 aa14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 IL6STP40189 918 aaPredicted RBP14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 NEK4P51957 841 aa14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 CEMIPQ8WUJ3 1361 aa14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 MCM4P33991 863 aa14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 MTFR1LQ9H019 292 aa14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 EIF4A1P60842 406 aaKnown RBP14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 RBM10P98175 930 aaKnown RBP14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 MBIPQ9NS73 344 aa14.06□□□□□ -0.16
SYNGAP1-201ENST00000293748 KINO60870 393 aaKnown RBP14.05□□□□□ -0.16
SYNGAP1-201ENST00000293748 ZNF428Q96B54 188 aa14.05□□□□□ -0.16
SYNGAP1-201ENST00000293748 BICDL1Q6ZP65 573 aa14.05□□□□□ -0.16
SYNGAP1-201ENST00000293748 TRIM35Q9UPQ4 493 aa14.05□□□□□ -0.16
SYNGAP1-201ENST00000293748 ATF5Q9Y2D1 282 aaPredicted RBP14.05□□□□□ -0.16
SYNGAP1-201ENST00000293748 PATL2C9JE40 543 aaKnown RBP14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 PTF1AQ7RTS3 328 aa14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 SETDB2Q96T68 719 aa14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 H0YHG0 523 aa14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 CT47B1P0C2W7 299 aaPredicted RBP14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 CALRP27797 417 aaKnown RBP14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 ZBTB7AO95365 584 aa14.04□□□□□ -0.16
SYNGAP1-201ENST00000293748 ST5P78524 1137 aa14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 VPS53Q5VIR6 699 aa14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 LINC00116Q8NCU8 138 aa14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 TSR2Q969E8 191 aaKnown RBP14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 GIGYF1O75420 1035 aaPredicted RBP14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 GNAI3P08754 354 aa14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 RRP12Q5JTH9 1297 aaKnown RBP14.03□□□□□ -0.16
SYNGAP1-201ENST00000293748 RGPD2P0DJD1 1756 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 K7ELQ4 463 aaPredicted RBP14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 APPP05067 770 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 CYP19A1P11511 503 aaPredicted RBP14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 EXOSC9Q06265 439 aaKnown RBP14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 LEKR1Q6ZMV7 388 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 RALYLQ86SE5 291 aaKnown RBP14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 CNTROBQ8N137 903 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 CCDC112Q8NEF3 446 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 ZBTB1Q9Y2K1 713 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 CCDC192P0DO97 292 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 ITPK1Q13572 414 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 FBXW7Q969H0 707 aa14.02□□□□□ -0.16
SYNGAP1-201ENST00000293748 A1BGP04217 495 aa14.02□□□□□ -0.17
SYNGAP1-201ENST00000293748 NYXQ9GZU5 481 aa14.02□□□□□ -0.17
SYNGAP1-201ENST00000293748 PKD1L3Q7Z443 1732 aa14.01□□□□□ -0.17
SYNGAP1-201ENST00000293748 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms