RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 PRDM11Q9NQV5 511 aa22.11■■□□□ 1.13
SHKBP1-201ENST00000291842 A0A087WZG4 1122 aa22.11■■□□□ 1.13
SHKBP1-201ENST00000291842 NASPP49321 788 aaPredicted RBP22.11■■□□□ 1.13
SHKBP1-201ENST00000291842 TOM1L2Q6ZVM7 507 aa22.11■■□□□ 1.13
SHKBP1-201ENST00000291842 FSD1Q9BTV5 496 aa22.11■■□□□ 1.13
SHKBP1-201ENST00000291842 LARGE1O95461 756 aa22.1■■□□□ 1.13
SHKBP1-201ENST00000291842 TMEM63CQ9P1W3 806 aa22.1■■□□□ 1.13
SHKBP1-201ENST00000291842 LIMCH1Q9UPQ0 1083 aa22.1■■□□□ 1.13
SHKBP1-201ENST00000291842 KCNJ4P48050 445 aa22.1■■□□□ 1.13
SHKBP1-201ENST00000291842 ZNF445P59923 1031 aa22.1■■□□□ 1.13
SHKBP1-201ENST00000291842 NDUFB9Q9Y6M9 179 aa22.1■■□□□ 1.13
SHKBP1-201ENST00000291842 CCDC171Q6TFL3 1326 aa22.09■■□□□ 1.13
SHKBP1-201ENST00000291842 A0A0D9SFI3 127 aa22.09■■□□□ 1.13
SHKBP1-201ENST00000291842 PTPN12Q05209 780 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-201ENST00000291842 TFCP2Q12800 502 aa22.09■■□□□ 1.13
SHKBP1-201ENST00000291842 RBM8AQ9Y5S9 174 aaKnown RBP22.09■■□□□ 1.13
SHKBP1-201ENST00000291842 MRC1P22897 1456 aa22.08■■□□□ 1.13
SHKBP1-201ENST00000291842 NECTIN1Q15223 517 aa22.08■■□□□ 1.13
SHKBP1-201ENST00000291842 CPDO75976 1380 aa22.08■■□□□ 1.12
SHKBP1-201ENST00000291842 NBPF26B4DH59 902 aa22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 RFX5P48382 616 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 PRIM1P49642 420 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 COL9A3Q14050 684 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 NBPF14Q5TI25 921 aa22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 NBPF10Q6P3W6 841 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 NBPF15Q8N660 670 aa22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 PDRG1Q9NUG6 133 aa22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 CCDC9Q9Y3X0 531 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 RPAP1Q9BWH6 1393 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 ZCRB1Q8TBF4 217 aaKnown RBP22.07■■□□□ 1.12
SHKBP1-201ENST00000291842 TPRNQ4KMQ1 711 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 DBNLQ9UJU6 430 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 CHMP3Q9Y3E7 222 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 WDR33Q9C0J8 1336 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 SYCE3A1L190 88 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 CREB3L3Q68CJ9 461 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 CCDC83Q8IWF9 413 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 RBSNQ9H1K0 784 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 COPRSQ9NQ92 184 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 PKD1L3Q7Z443 1732 aa22.06■■□□□ 1.12
SHKBP1-201ENST00000291842 TTLL7Q6ZT98 887 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 PLBD2Q8NHP8 589 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 CYP46A1Q9Y6A2 500 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 AFDNP55196 1824 aaKnown RBP22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 A1BGP04217 495 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 TNNI3KQ59H18 835 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 TRIM44Q96DX7 344 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 ZSWIM6Q9HCJ5 1215 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 FPGT-TNNI3KV9GXZ4 949 aa22.05■■□□□ 1.12
SHKBP1-201ENST00000291842 GADD45BO75293 160 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 CHGBP05060 677 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 ZKSCAN1P17029 563 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 LMBR1LQ6UX01 489 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 ZNF589Q86UQ0 364 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 MAP4K1Q92918 833 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 WDR17Q8IZU2 1322 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 HIP1O00291 1037 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 STRN4Q9NRL3 753 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 SMC3Q9UQE7 1217 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 TAF6LQ9Y6J9 622 aa22.04■■□□□ 1.12
SHKBP1-201ENST00000291842 ABCC6O95255 1503 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 ERBB4Q15303 1308 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 RABL6Q3YEC7 729 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 VPS53Q5VIR6 699 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 TCEANC2Q96MN5 208 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 PCDH11XQ9BZA7 1347 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 PCDH11YQ9BZA8 1340 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 SLC27A2O14975 620 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 SYT1P21579 422 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 CASP7P55210 303 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 USP48Q86UV5 1035 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 KCNB2Q92953 911 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 ARFGEF2Q9Y6D5 1785 aa22.03■■□□□ 1.12
SHKBP1-201ENST00000291842 DBNDD2Q9BQY9 259 aa22.02■■□□□ 1.12
SHKBP1-201ENST00000291842 ANO8Q9HCE9 1232 aaPredicted RBP22.02■■□□□ 1.12
SHKBP1-201ENST00000291842 NECAB1Q8N987 351 aa22.02■■□□□ 1.11
SHKBP1-201ENST00000291842 DNAJC2Q99543 621 aaKnown RBP22.02■■□□□ 1.11
SHKBP1-201ENST00000291842 ZBTB3Q9H5J0 574 aa22.02■■□□□ 1.11
SHKBP1-201ENST00000291842 STX6O43752 255 aa22.01■■□□□ 1.11
SHKBP1-201ENST00000291842 MBD3O95983 291 aa22.01■■□□□ 1.11
SHKBP1-201ENST00000291842 ZSCAN22P10073 491 aaPredicted RBP22.01■■□□□ 1.11
SHKBP1-201ENST00000291842 TM6SF1Q9BZW5 370 aa22.01■■□□□ 1.11
SHKBP1-201ENST00000291842 GLI3P10071 1580 aa22■■□□□ 1.11
SHKBP1-201ENST00000291842 TCHHQ07283 1943 aa22■■□□□ 1.11
SHKBP1-201ENST00000291842 GJB2P29033 226 aa22■■□□□ 1.11
SHKBP1-201ENST00000291842 ME3Q16798 604 aa22■■□□□ 1.11
SHKBP1-201ENST00000291842 ANP32BQ92688 251 aaKnown RBP22■■□□□ 1.11
SHKBP1-201ENST00000291842 SLAIN2Q9P270 581 aa22■■□□□ 1.11
SHKBP1-201ENST00000291842 CNPY2Q9Y2B0 182 aa22■■□□□ 1.11
SHKBP1-201ENST00000291842 XIRP1Q702N8 1843 aaKnown RBP22■■□□□ 1.11
SHKBP1-201ENST00000291842 ESPNB1AK53 854 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 ATP5JP18859 108 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 FOXO4P98177 505 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 CCDC173Q0VFZ6 552 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 ST3GAL1Q11201 340 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 LRSAM1Q6UWE0 723 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 TPCN1Q9ULQ1 816 aa21.99■■□□□ 1.11
SHKBP1-201ENST00000291842 IL2RBP14784 551 aa21.98■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 114.7 ms