RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 EGFL6Q8IUX8 553 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MCATQ8IVS2 390 aaKnown RBP15.2■□□□□ 0.02
COL4A1-204ENST00000543140 FAM26EQ8N5C1 309 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 C19orf47Q8N9M1 422 aaKnown RBP15.2■□□□□ 0.02
COL4A1-204ENST00000543140 DRAXINQ8NBI3 349 aaPredicted RBP15.2■□□□□ 0.02
COL4A1-204ENST00000543140 OR6Q1Q8NGQ2 317 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MCFD2Q8NI22 146 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 PHOX2BQ99453 314 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 KCNE5Q9UJ90 142 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 PCDH15Q96QU1 1955 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 GXYLT2A0PJZ3 443 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 ARHGAP33O14559 1287 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 PLOD3O60568 738 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 STX11O75558 287 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MED26O95402 600 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 CH25HO95992 272 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 BMP4P12644 408 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 CSTF2P33240 577 aaKnown RBP eCLIP15.2■□□□□ 0.02
COL4A1-204ENST00000543140 IFNGR2P38484 337 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 SOX3P41225 446 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MGAT2Q10469 447 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 SMAD4Q13485 552 aaKnown RBP15.2■□□□□ 0.02
COL4A1-204ENST00000543140 UBXN2BQ14CS0 331 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 OCLNQ16625 522 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 SLC27A4Q6P1M0 643 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 GJD3Q8N144 294 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 PIGXQ8TBF5 258 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 LMX1AQ8TE12 382 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF582Q96NG8 517 aaPredicted RBP15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MAP3K3Q99759 626 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF350Q9GZX5 532 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 MIR1-1HGQ9H1L0 117 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 SLC2A4RGQ9NR83 387 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 ERGIC3Q9Y282 383 aa15.2■□□□□ 0.02
COL4A1-204ENST00000543140 GNSP15586 552 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 EEF1A1P68104 462 aaKnown RBP15.19■□□□□ 0.02
COL4A1-204ENST00000543140 TSPAN31Q12999 210 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 DUSP8Q13202 625 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 ERV3-1Q14264 604 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 INAQ16352 499 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 Q6ZNX1 250 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 CDRT4Q8N9R6 151 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 ACOT11Q8WXI4 607 aaPredicted RBP15.19■□□□□ 0.02
COL4A1-204ENST00000543140 ABHD8Q96I13 439 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 PRDM9Q9NQV7 894 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 DOLKQ9UPQ8 538 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 SPEGQ15772 3267 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 OR10H2O60403 315 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF136P52737 540 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 NCF4Q15080 339 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 SSX1Q16384 188 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 MRPL2Q5T653 305 aaKnown RBP15.19■□□□□ 0.02
COL4A1-204ENST00000543140 SLC30A6Q6NXT4 461 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 CHRDL2Q6WN34 429 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 USP43Q70EL4 1123 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF619Q8N2I2 560 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 ARL14Q8N4G2 192 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 MSANTD3Q96H12 275 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 UBE2ZQ9H832 354 aaPredicted RBP15.19■□□□□ 0.02
COL4A1-204ENST00000543140 CARD8Q9Y2G2 431 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 PCDHGA3Q9Y5H0 932 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 SPAG17Q6Q759 2223 aa15.19■□□□□ 0.02
COL4A1-204ENST00000543140 A0A087WV62 115 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 KRBA1A5PL33 1030 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 CSO75390 466 aaKnown RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 PSMD7P51665 324 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 RAB38P57729 211 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 MAT1AQ00266 395 aaKnown RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 SLC13A2Q13183 592 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 DECR1Q16698 335 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 MEDAGQ5VYS4 303 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 ZAR1Q86SH2 424 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 ATCAYQ86WG3 371 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 OPALINQ96PE5 141 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 C6orf62Q9GZU0 229 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 FBXO8Q9NRD0 319 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 CCRL2O00421 344 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 TUBA1BP68363 451 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 EFNB1P98172 346 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF155Q12901 538 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 SPHARQ15513 63 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 TUBA1AQ71U36 451 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF687Q8N1G0 1237 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 MFSD4AQ8N468 514 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 METTL27Q8N6F8 245 aaPredicted RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 OR52R1Q8NGF1 315 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 NR4A3Q92570 626 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 PEX11GQ96HA9 241 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 FOXQ1Q9C009 403 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 WDR12Q9GZL7 423 aaKnown RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 PALMDQ9NP74 551 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 DUSP22Q9NRW4 184 aa15.18■□□□□ 0.02
COL4A1-204ENST00000543140 LSM2Q9Y333 95 aaKnown RBP15.18■□□□□ 0.02
COL4A1-204ENST00000543140 HRKO00198 91 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF217O75362 1048 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 OR5F1O95221 314 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 HTR2AP28223 471 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 CD38P28907 300 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 UGT2B10P36537 528 aa15.17■□□□□ 0.02
COL4A1-204ENST00000543140 ZNF404Q494X3 552 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms