RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 FOXJ2Q9P0K8 574 aa17.27■□□□□ 0.36
CLN3-206ENST00000360019 NXT1Q9UKK6 140 aaKnown RBP17.27■□□□□ 0.36
CLN3-206ENST00000360019 PCDHGB3Q9Y5G1 929 aa17.27■□□□□ 0.36
CLN3-206ENST00000360019 PTPRZ1P23471 2315 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 C9J4A7 227 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 hCG_2039718K7EN88 272 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 CLOCKO15516 846 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 SERPINB7O75635 380 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 KLF7O75840 302 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 LDLRP01130 860 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 POU6F2P78424 691 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 TARDBPQ13148 414 aaKnown RBP eCLIP17.26■□□□□ 0.35
CLN3-206ENST00000360019 ZNHIT3Q15649 155 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 IFI44LQ53G44 452 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 ZSCAN1Q8NBB4 408 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 OR4N2Q8NGD1 307 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 SPPL2AQ8TCT8 520 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 METTL21AQ8WXB1 218 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 CENPNQ96H22 339 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 WDR77Q9BQA1 342 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 NTN4Q9HB63 628 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 SEC14L3Q9UDX4 400 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 PRODH2Q9UF12 536 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 MKLN1Q9UL63 735 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 ABCG2Q9UNQ0 655 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 ASPMQ8IZT6 3477 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 KCNK2O95069 426 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 CST1P01037 141 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 FABP3P05413 133 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 FESP07332 822 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 CYC1P08574 325 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 OR1E2P47887 323 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 KCNJ5P48544 419 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 GPR143P51810 404 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 NNATQ16517 81 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 FIGNL1Q6PIW4 674 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 TMEM205Q6UW68 189 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 TSEN54Q7Z6J9 526 aaKnown RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 COMTD1Q86VU5 262 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 MORN4Q8NDC4 146 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 OR1N1Q8NGS0 311 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 APOBEC4Q8WW27 367 aaKnown RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 RMND5BQ96G75 393 aaPredicted RBP17.26■□□□□ 0.35
CLN3-206ENST00000360019 ART5Q96L15 291 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 SLC46A1Q96NT5 459 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 SH3GLB1Q9Y371 365 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 WDR45Q9Y484 360 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 AHCTF1Q8WYP5 2266 aa17.26■□□□□ 0.35
CLN3-206ENST00000360019 SDK2Q58EX2 2172 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 PRKNO60260 465 aaPredicted RBP17.25■□□□□ 0.35
CLN3-206ENST00000360019 PRSS23O95084 383 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 AK1P00568 194 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 UMODP07911 640 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 TRHRP34981 398 aaPredicted RBP17.25■□□□□ 0.35
CLN3-206ENST00000360019 NHLH1Q02575 133 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 PUM1Q14671 1186 aaKnown RBP eCLIP17.25■□□□□ 0.35
CLN3-206ENST00000360019 C6orf15Q6UXA7 325 aaPredicted RBP17.25■□□□□ 0.35
CLN3-206ENST00000360019 MARCH9Q86YJ5 346 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 C9orf40Q8IXQ3 194 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 KBTBD2Q8IY47 623 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 ICA1LQ8NDH6 482 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 BTBD9Q96Q07 612 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 SAP130Q9H0E3 1048 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 DNAJB9Q9UBS3 223 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 BAG5Q9UL15 447 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 PADI1Q9ULC6 663 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 PADI2Q9Y2J8 665 aa17.25■□□□□ 0.35
CLN3-206ENST00000360019 GPR55Q9Y2T6 319 aaPredicted RBP17.25■□□□□ 0.35
CLN3-206ENST00000360019 CENPVL1A0A0U1RR11 272 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 SAGE2PA6NJ88 616 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 DEAF1O75398 565 aaPredicted RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 SOX30O94993 753 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 DIRAS1O95057 198 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 EPPINO95925 133 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 PABPC4LP0CB38 370 aaKnown RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 EBPQ15125 230 aaKnown RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 TMEM164Q5U3C3 297 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 PIWIL3Q7Z3Z3 882 aaKnown RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 ZAR1Q86SH2 424 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 EPHX4Q8IUS5 362 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 NFAM1Q8NET5 270 aaPredicted RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 RASSF5Q8WWW0 418 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 GEMIN6Q8WXD5 167 aaKnown RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 C8orf44Q96CB5 159 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 CIB1Q99828 191 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 SPATA5L1Q9BVQ7 753 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 Q9N2J8 555 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 PTRH2Q9Y3E5 179 aaKnown RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 CELSR3Q9NYQ7 3312 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 DLL1O00548 723 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 KIAA0513O60268 411 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 BRINP1O60477 761 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 STX11O75558 287 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 IGKV1D-16P01601 117 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 ALPPP05187 535 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 CEACAM1P13688 526 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 GPR68Q15743 365 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 GRAMD1BQ3KR37 738 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 PAPD4Q6PIY7 484 aaKnown RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 CPEB2Q7Z5Q1 589 aaKnown RBP17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms