RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 BHLHB9Q6PI77 547 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 ADGRG5Q8IZF4 528 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 ST13P4Q8IZP2 240 aaPredicted RBP17.42■□□□□ 0.38
CLN3-206ENST00000360019 C11orf65Q8NCR3 313 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 OR52E4Q8NGH9 312 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 OR5D16Q8NGK9 328 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 FAM110BQ8TC76 370 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 ZNF675Q8TD23 568 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 PMEPA1Q969W9 287 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 CLIP3Q96DZ5 547 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 OR51I1Q9H343 314 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 PTGFRNQ9P2B2 879 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 CTSFQ9UBX1 484 aa17.42■□□□□ 0.38
CLN3-206ENST00000360019 OR10H2O60403 315 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 ARAFP10398 606 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 ANPEPP15144 967 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 PRIM2P49643 509 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 RBBP4Q09028 425 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 CDCP2Q5VXM1 449 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 ZFP1Q6P2D0 407 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 GOLM1Q8NBJ4 401 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 RAB8BQ92930 207 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 FAM162AQ96A26 154 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 CTHRC1Q96CG8 243 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 C16orf58Q96GQ5 468 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 FBXO8Q9NRD0 319 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 PCDHGA1Q9Y5H4 931 aa17.41■□□□□ 0.38
CLN3-206ENST00000360019 PLOD3O60568 738 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 MATN1P21941 496 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 IL10P22301 178 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 RORAP35398 523 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 SCARB2Q14108 478 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 MINDY4Q4G0A6 757 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.4■□□□□ 0.38
CLN3-206ENST00000360019 NKAIN1Q4KMZ8 207 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 MTX3Q5HYI7 312 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 GALNT10Q86SR1 603 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 FAM86B1Q8N7N1 296 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 NFKBIDQ8NI38 313 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 FBXO30Q8TB52 745 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 MIPOL1Q8TD10 442 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 OTUB1Q96FW1 271 aaPredicted RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 PTCHD1Q96NR3 888 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 CMKLR1Q99788 373 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 YIPF4Q9BSR8 244 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 RASSF4Q9H2L5 321 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 CXorf21Q9HAI6 301 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 MKKSQ9NPJ1 570 aaPredicted RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 EQTNQ9NQ60 294 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 DCAF13Q9NV06 445 aaKnown RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 C19orf53Q9UNZ5 99 aaPredicted RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 MMACHCQ9Y4U1 282 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 V9GYQ6 96 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 A0A087WV62 115 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 GCM2O75603 506 aaPredicted RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 SLITRK5O94991 958 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 SERPINA1P01009 418 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 GPIP06744 558 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 HBQ1P09105 142 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 OR12D1P0DN82 309 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 ZNF28P17035 718 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 ITIH1P19827 911 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 SLC7A1P30825 629 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 KDELR2P33947 212 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 STT3AP46977 705 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 CRYBA2P53672 197 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 CDK6Q00534 326 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 TRIP6Q15654 476 aaKnown RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 MAPK11Q15759 364 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 ISXQ2M1V0 245 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 ZNF630Q2M218 657 aaPredicted RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 QSOX2Q6ZRP7 698 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 TSLPQ969D9 159 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 MS4A4EQ96PG1 132 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 A4GALTQ9NPC4 353 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 CCM2LQ9NUG4 571 aaPredicted RBP17.4■□□□□ 0.38
CLN3-206ENST00000360019 AURKCQ9UQB9 309 aa17.4■□□□□ 0.38
CLN3-206ENST00000360019 NUP210LQ5VU65 1888 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 IGLV3-12A0A075B6K2 115 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 IGKV3D-11A0A0A0MRZ8 115 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 PRAMEF27A3QJZ7 478 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 B4E171 279 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 FOXD2O60548 495 aaPredicted RBP17.39■□□□□ 0.37
CLN3-206ENST00000360019 BAG2O95816 211 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 IFI6P09912 130 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 TFPTP0C1Z6 253 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 PSMA4P25789 261 aaKnown RBP17.39■□□□□ 0.37
CLN3-206ENST00000360019 AQP1P29972 269 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 TSPAN7P41732 249 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 MAN2A2P49641 1150 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 KHKP50053 298 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 DCDP81605 110 aaKnown RBP17.39■□□□□ 0.37
CLN3-206ENST00000360019 RHAGQ02094 409 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 SLC34A1Q06495 639 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 LRRC23Q53EV4 343 aaPredicted RBP17.39■□□□□ 0.37
CLN3-206ENST00000360019 LAPTM4BQ86VI4 370 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 GALNT12Q8IXK2 581 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 SLC38A5Q8WUX1 472 aa17.39■□□□□ 0.37
CLN3-206ENST00000360019 RBM18Q96H35 190 aaKnown RBP17.39■□□□□ 0.37
CLN3-206ENST00000360019 DGAT2Q96PD7 388 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms