RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	CHZ1	P40019	153 aa	Predicted RBP	3.8	□□□□□ -1.8
LCB4	YOR171C	FAF1	P40546	346 aa	Predicted RBP	3.8	□□□□□ -1.8
LCB4	YOR171C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	3.8	□□□□□ -1.8	not detected
LCB4	YOR171C	HBN1	Q96VH4	193 aa		3.8	□□□□□ -1.8
LCB4	YOR171C	THS1	P04801	734 aa	Known RBP	3.79	□□□□□ -1.8
LCB4	YOR171C	GCD1	P09032	578 aa	Predicted RBP	3.79	□□□□□ -1.8
LCB4	YOR171C	PRO1	P32264	428 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	MDL2	P33311	773 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	KAE1	P36132	386 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	ERT1	P38140	529 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	YBR284W	P38150	797 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	CCZ1	P38273	704 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	GEM1	P39722	662 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	HUL4	P40985	892 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	3.79	□□□□□ -1.8	not detected
LCB4	YOR171C	GRX3	Q03835	250 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	PLP2	Q12017	286 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	YGR161W-C	Q3E744	92 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	BI4	P03879	638 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	PHO8	P11491	566 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	AAR2	P32357	355 aa	Predicted RBP	3.79	□□□□□ -1.8
LCB4	YOR171C	AFR1	P33304	620 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	SIT1	P39980	628 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	YGR130C	P53278	816 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	MDM1	Q01846	1127 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	PKH1	Q03407	766 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	YDL124W	Q07551	312 aa	Known RBP	3.79	□□□□□ -1.8
LCB4	YOR171C	RSC58	Q07979	502 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	TRE1	Q08919	783 aa		3.79	□□□□□ -1.8
LCB4	YOR171C	QCR6	P00127	147 aa		3.78	□□□□□ -1.8
LCB4	YOR171C	MUM2	P38236	366 aa		3.78	□□□□□ -1.8
LCB4	YOR171C	YJR142W	P47173	342 aa		3.78	□□□□□ -1.8
LCB4	YOR171C	BUL2	Q03758	920 aa	Known RBP	3.78	□□□□□ -1.8
LCB4	YOR171C	YLR125W	Q12138	136 aa		3.78	□□□□□ -1.8
LCB4	YOR171C	TY1B-A	O13527	1196 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	TRP3	P00937	484 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	MSD1	P15179	658 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	NPP1	P25353	742 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	DPB3	P27344	201 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	PPH3	P32345	308 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	SWI3	P32591	825 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	PTC7	P38797	343 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	UBP12	P39538	1254 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	SAH1	P39954	449 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	NPP2	P39997	493 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	GTS1	P40956	396 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	MTC3	P53077	123 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	YPR071W	Q12346	211 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	HSP82	P02829	709 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	HSC82	P15108	705 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	PET10	P36139	283 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	YKR073C	P36153	106 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	MNN1	P39106	762 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	YEN1	P40028	759 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	MAL11	P53048	616 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	SRP1	Q02821	542 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	SSY1	Q03770	852 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	ATG13	Q06628	738 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	IMH1	Q06704	911 aa	Known RBP	3.77	□□□□□ -1.81
LCB4	YOR171C	MDM38	Q08179	573 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	YLL058W	Q12198	575 aa		3.77	□□□□□ -1.81
LCB4	YOR171C	CYC7	P00045	113 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	MET6	P05694	767 aa	Known RBP	3.76	□□□□□ -1.81
LCB4	YOR171C	ACE2	P21192	770 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	CDC11	P32458	415 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	AIM26	P32858	118 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	YRO2	P38079	344 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	GIC1	P38785	314 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	ENV11	P53246	860 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	SDH1	Q00711	640 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	YDR341C	Q05506	607 aa	Known RBP	3.76	□□□□□ -1.81
LCB4	YOR171C	NBA1	Q08229	501 aa	Known RBP	3.76	□□□□□ -1.81
LCB4	YOR171C	VPS5	Q92331	675 aa		3.76	□□□□□ -1.81
LCB4	YOR171C	TFC3	P34111	1160 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	ABZ1	P37254	787 aa	Predicted RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	TOK1	P40310	691 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	UBP6	P43593	499 aa	Known RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	HOS2	P53096	452 aa	Predicted RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	RSB1	Q08417	382 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	LPX1	Q12405	387 aa	Known RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	NSI1	Q12457	570 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	TOM70	P07213	617 aa	Known RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	THI4	P32318	326 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	TSL1	P38427	1098 aa	Known RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	PES4	P39684	611 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	RRT14	P40470	206 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	TAF1	P46677	1066 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	HFM1	P51979	1187 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	FOL1	P53848	824 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	SRT1	Q03175	343 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	VMS1	Q04311	632 aa	Known RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	LCD1	Q04377	747 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	SVS1	Q12254	260 aa		3.75	□□□□□ -1.81
LCB4	YOR171C	RIB2	Q12362	591 aa	Known RBP	3.75	□□□□□ -1.81
LCB4	YOR171C	ADE8	P04161	214 aa		3.74	□□□□□ -1.81
LCB4	YOR171C	ADP1	P25371	1049 aa		3.74	□□□□□ -1.81
LCB4	YOR171C	TOS1	P38288	455 aa		3.74	□□□□□ -1.81
LCB4	YOR171C	GDH3	P39708	457 aa		3.74	□□□□□ -1.81
LCB4	YOR171C	GYP7	P48365	746 aa		3.74	□□□□□ -1.81
LCB4	YOR171C	YGR021W	P53212	290 aa		3.74	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 87.1 ms