RNA–Protein interactions for RNA: YMR128W

ECM16, Transcript of Essential DEAH-box ATP-dependent RNA helicase specific to U3 snoRNP, yeast

Gene ECM16, Length 3,804 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
ECM16	YMR128W	CRG1	P38892	291 aa	RIP-Chip data	4.17	□□□□□ -1.74	RIP-Chip
ECM16	YMR128W	SOV1	Q04748	898 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	SPO11	P23179	398 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	SER1	P33330	395 aa	Known RBP	4.17	□□□□□ -1.74
ECM16	YMR128W	BUD16	P39988	312 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	YJR142W	P47173	342 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	PIN2	Q12057	282 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	YOR111W	Q99210	232 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	CDC60	P26637	1090 aa	Known RBP	4.17	□□□□□ -1.74
ECM16	YMR128W	SWH1	P35845	1188 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	DOS2	P54858	310 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	GIS4	Q04233	774 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	SPP382	Q06411	708 aa	Predicted RBP	4.17	□□□□□ -1.74
ECM16	YMR128W	MET32	Q12041	191 aa		4.17	□□□□□ -1.74
ECM16	YMR128W	PPR1	P07272	904 aa	Predicted RBP	4.16	□□□□□ -1.74
ECM16	YMR128W	SEC20	P28791	383 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	PIC2	P40035	300 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	IES1	P43579	692 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	ARG4	P04076	463 aa	Predicted RBP	4.16	□□□□□ -1.74
ECM16	YMR128W	TUP1	P16649	713 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	ISC10	P32645	267 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	VFA1	P40080	203 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	FAR11	P53917	953 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	UFD2	P54860	961 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	YLR287C	Q05881	355 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	SIL1	Q08199	421 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
ECM16	YMR128W	PRO3	P32263	286 aa	Known RBP	4.16	□□□□□ -1.74
ECM16	YMR128W	MCD4	P36051	919 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	HEL1	P36113	551 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	ISW1	P38144	1129 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	HXT15	P54854	567 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	TBF1	Q02457	562 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	DIG1	Q03063	452 aa	Known RBP	4.16	□□□□□ -1.74
ECM16	YMR128W	INM2	Q05533	292 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	OSH2	Q12451	1283 aa		4.16	□□□□□ -1.74
ECM16	YMR128W	PIF1	P07271	859 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	CIT2	P08679	460 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	ARG1	P22768	420 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	YEL043W	P32618	956 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	IRC8	P47046	822 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	CCM1	P48237	864 aa	Predicted RBP	4.15	□□□□□ -1.74
ECM16	YMR128W	VPS4	P52917	437 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	YGR053C	P53234	283 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	RUD3	Q12234	484 aa	Known RBP	4.15	□□□□□ -1.74
ECM16	YMR128W	RIB2	Q12362	591 aa	Known RBP	4.15	□□□□□ -1.74
ECM16	YMR128W	POM152	P39685	1337 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	SAC3	P46674	1301 aa		4.15	□□□□□ -1.74
ECM16	YMR128W	HIS4	P00815	799 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	MET6	P05694	767 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	VMA3	P25515	160 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	BMH1	P29311	267 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	RXT2	P38255	430 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	EFM2	P38347	419 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	SET5	P38890	526 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	HVG1	P0CE11	249 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	HIR1	P32479	840 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	BMH2	P34730	273 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	YKL069W	P36088	180 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	PTC2	P39966	464 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	THI3	Q07471	609 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	NOP6	Q07623	225 aa	Known RBP	4.15	□□□□□ -1.75
ECM16	YMR128W	YAP7	Q08182	245 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	PHM7	Q12252	991 aa		4.15	□□□□□ -1.75
ECM16	YMR128W	MRX1	P40050	688 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	FYV8	P46949	817 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	RPT6	Q01939	405 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	URH1	Q04179	340 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	NUR1	Q12066	484 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	RPL22A	P05749	121 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	CYT1	P07143	309 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	NUC1	P08466	329 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	GFA1	P14742	717 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	PDB1	P32473	366 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	RPT1	P33299	467 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	MYO3	P36006	1272 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	PRP3	Q03338	469 aa	Predicted RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	VPS72	Q03388	795 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	MCM3	P24279	971 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	PUF4	P25339	888 aa	Known RBP RIP-Chip data	4.14	□□□□□ -1.75	not detected
ECM16	YMR128W	ANP1	P32629	500 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	STE5	P32917	917 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	TRS85	P46944	698 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	CDC55	Q00362	526 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	RPS15	Q01855	142 aa	Known RBP	4.14	□□□□□ -1.75
ECM16	YMR128W	YDR278C	Q05612	105 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	ENT1	Q12518	454 aa		4.14	□□□□□ -1.75
ECM16	YMR128W	PYC1	P11154	1178 aa	Known RBP	4.13	□□□□□ -1.75
ECM16	YMR128W	PMR1	P13586	950 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	PRP40	P33203	583 aa	Known RBP	4.13	□□□□□ -1.75
ECM16	YMR128W	BCD1	P38772	366 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	YMR114C	Q04471	368 aa	Known RBP	4.13	□□□□□ -1.75
ECM16	YMR128W	TAF9	Q05027	157 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	SPO75	Q07798	868 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	PLP2	Q12017	286 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	FUR4	P05316	633 aa	Known RBP	4.13	□□□□□ -1.75
ECM16	YMR128W	ERG11	P10614	530 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	MSN1	P22148	382 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	BYE1	P36106	594 aa		4.13	□□□□□ -1.75
ECM16	YMR128W	YNL320W	P42840	284 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 29.6 ms